Evidence map›Paper›PMID 36971348›Full record

ArticleDevelopment (Cambridge, England)2023

Identification of a heterogeneous and dynamic ciliome during embryonic development and cell differentiation.

Kelsey H Elliott, Sai K Balchand, Christian Louis Bonatto Paese, Ching-Fang Chang, Yanfen Yang, Kari M Brown, Daniel T Rasicci, Hao He, Konrad Thorner, Praneet Chaturvedi and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Development (Cambridge, England), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Cilia and transcription: a mini review.Frontiers in cell and developmental biology · 2025
    Review
  6. Article
  7. Disruption of distal appendage protein CEP164 causes skeletal malformation in mice.Biochemical and biophysical research communications · 2024
    Article
  8. Article
  9. Article
  10. Uncovering cilia function in glial development.Annals of human genetics · 2024
    Review
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

Kelsey H ElliottDivision of Developmental Biology, Department of Pediatrics, Cincinnati Children's Hospital Medical, Cincinnati, OH 45229, USA.
Sai K BalchandUniversity of Cincinnati, College of Medicine, Department of Pediatrics, Cincinnati, OH 45229, USA.
Christian Louis Bonatto PaeseDivision of Developmental Biology, Department of Pediatrics, Cincinnati Children's Hospital Medical, Cincinnati, OH 45229, USA.ORCID 0000-0001-5992-5209
Ching-Fang ChangDivision of Developmental Biology, Department of Pediatrics, Cincinnati Children's Hospital Medical, Cincinnati, OH 45229, USA.
Yanfen YangDivision of Developmental Biology, Department of Pediatrics, Cincinnati Children's Hospital Medical, Cincinnati, OH 45229, USA.
Kari M BrownDivision of Developmental Biology, Department of Pediatrics, Cincinnati Children's Hospital Medical, Cincinnati, OH 45229, USA.
Daniel T RasicciThe Jackson Laboratory, Bar Harbor, ME 04609, USA.
Hao HeThe Jackson Laboratory, Bar Harbor, ME 04609, USA.
Konrad ThornerDivision of Developmental Biology, Department of Pediatrics, Cincinnati Children's Hospital Medical, Cincinnati, OH 45229, USA.
Praneet ChaturvediDivision of Developmental Biology, Department of Pediatrics, Cincinnati Children's Hospital Medical, Cincinnati, OH 45229, USA.
Stephen A MurrayThe Jackson Laboratory, Bar Harbor, ME 04609, USA.
Jing ChenUniversity of Cincinnati, College of Medicine, Department of Pediatrics, Cincinnati, OH 45229, USA.ORCID 0000-0002-6227-7393
Aleksey PorolloUniversity of Cincinnati, College of Medicine, Department of Pediatrics, Cincinnati, OH 45229, USA.
Kevin A PetersonThe Jackson Laboratory, Bar Harbor, ME 04609, USA.ORCID 0000-0001-8353-3694
Samantha A BrugmannDivision of Developmental Biology, Department of Pediatrics, Cincinnati Children's Hospital Medical, Cincinnati, OH 45229, USA.ORCID 0000-0002-6860-6450
Cincinnati Children's Hospital Medical Center · USJackson Laboratory · USUniversity of Cincinnati Medical Center · US

Funding

The Jackson Laboratory Knockout Mouse Production and Phenotyping Project (JAX KOMP2)UM1OD023222 · OD · JACKSON LABORATORY · PI ROBERT E BRAUN, Stephen A Murray · 2016 to 2026
$47.2M
Harnessing the therapeutic potential of neural crest cells by manipulating the primary ciliumR35DE027557 · NIDCR · CINCINNATI CHILDRENS HOSP MED CTR · PI BRUGMANN, SAMANTHA A · 2017 to 2024
$7.6M
Predicting Tissue Specific Gli3 Regulatory Activity Using Hand2R01DE031750 · NIDCR · JACKSON LABORATORY · PI Samantha A Brugmann, Kevin Anthony Peterson · 2022 to 2026
$3.9M
Transcriptional control of Hedgehog/Gli target enhancersR01GM124251 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BAROLO, SCOTT, PETERSON, KEVIN ANTHONY · 2017 to 2020
$1.4M
NIDCR NIH HHS R01 DE031750NIDCR NIH HHS R35 DE027557NIGMS NIH HHS R01 GM124251NIH HHS UM1 OD023222
6 · The paper itself

Abstract

Primary cilia are nearly ubiquitous organelles that transduce molecular and mechanical signals. Although the basic structure of the cilium and the cadre of genes that contribute to ciliary formation and function (the ciliome) are believed to be evolutionarily conserved, the presentation of ciliopathies with narrow, tissue-specific phenotypes and distinct molecular readouts suggests that an unappreciated heterogeneity exists within this organelle. Here, we provide a searchable transcriptomic resource for a curated primary ciliome, detailing various subgroups of differentially expressed genes within the ciliome that display tissue and temporal specificity. Genes within the differentially expressed ciliome exhibited a lower level of functional constraint across species, suggesting organism and cell-specific function adaptation. The biological relevance of ciliary heterogeneity was functionally validated by using Cas9 gene-editing to disrupt ciliary genes that displayed dynamic gene expression profiles during osteogenic differentiation of multipotent neural crest cells. Collectively, this novel primary cilia-focused resource will allow researchers to explore longstanding questions related to how tissue and cell-type specific functions and ciliary heterogeneity may contribute to the range of phenotypes associated with ciliopathies.

Indexed as

CiliopathiesOsteogenesisCell DifferentiationCiliaEmbryonic DevelopmentHumansCiliopathyCraniofacialPrimary ciliaSkeletogenesisTissue heterogeneity

Identifiers

PMID36971348
PMCPMC10163354
OpenAlexW4361004285

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.