Evidence map›Paper›PMID 36970656›Full record

ArticleFrontiers in neuroinformatics2023

Maximum likelihood-based estimation of diffusion coefficient is quick and reliable method for analyzing estradiol actions on surface receptor movements.

Geza Makkai, Istvan M Abraham, Klaudia Barabas, Soma Godo, David Ernszt, Tamas Kovacs, Gergely Kovacs, Szilard Szocs, Tibor Z Janosi

Open access · goldFull text read
In one paragraph

Article in Frontiers in neuroinformatics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.2field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Geza MakkaiInstitute of Physiology, Medical School, University of Pécs, Pécs, Hungary.
Istvan M AbrahamInstitute of Physiology, Medical School, University of Pécs, Pécs, Hungary.
Klaudia BarabasInstitute of Physiology, Medical School, University of Pécs, Pécs, Hungary.
Soma GodoInstitute of Physiology, Medical School, University of Pécs, Pécs, Hungary.
David ErnsztInstitute of Physiology, Medical School, University of Pécs, Pécs, Hungary.
Tamas KovacsInstitute of Physiology, Medical School, University of Pécs, Pécs, Hungary.
Gergely KovacsInstitute of Physiology, Medical School, University of Pécs, Pécs, Hungary.
Szilard SzocsInstitute of Physiology, Medical School, University of Pécs, Pécs, Hungary.
Tibor Z JanosiInstitute of Physiology, Medical School, University of Pécs, Pécs, Hungary.
University of Pecs · HU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The rapid effects of estradiol on membrane receptors are in the focus of the estradiol research field, however, the molecular mechanisms of these non-classical estradiol actions are poorly understood. Since the lateral diffusion of membrane receptors is an important indicator of their function, a deeper understanding of the underlying mechanisms of non-classical estradiol actions can be achieved by investigating receptor dynamics. Diffusion coefficient is a crucial and widely used parameter to characterize the movement of receptors in the cell membrane. The aim of this study was to investigate the differences between maximum likelihood-based estimation (MLE) and mean square displacement (MSD) based calculation of diffusion coefficients. In this work we applied both MSD and MLE to calculate diffusion coefficients. Single particle trajectories were extracted from simulation as well as from α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptor tracking in live estradiol-treated differentiated PC12 (dPC12) cells. The comparison of the obtained diffusion coefficients revealed the superiority of MLE over the generally used MSD analysis. Our results suggest the use of the MLE of diffusion coefficients because as it has a better performance, especially for large localization errors or slow receptor movements.

Indexed as

diffusion coefficientmaximum likelihoodmean square displacementMLEreceptor movements

Identifiers

PMID36970656
PMCPMC10031098
OpenAlexW4323567883

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.