Evidence map›Paper›PMID 36970148›Full record

ArticleRSC medicinal chemistry2023

Structural rationalization of GSPT1 and IKZF1 degradation by thalidomide molecular glue derivatives.

Radosław P Nowak, Jianwei Che, Silas Ferrao, Nikki R Kong, Hu Liu, Breanna L Zerfas, Lyn H Jones

Open access · greenAbstract read
In one paragraph

Article in RSC medicinal chemistry, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 38 citations in OpenAlex.

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  6. Characterization of a dual degrader of MDM2 and GSPT1.European journal of medicinal chemistry · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Radosław P NowakCenter for Protein Degradation, Dana-Farber Cancer Institute 360 Longwood Avenue Boston MA USA.ORCID https://orcid.org/0000-0002-0605-0071
Jianwei CheCenter for Protein Degradation, Dana-Farber Cancer Institute 360 Longwood Avenue Boston MA USA.
Silas FerraoCenter for Protein Degradation, Dana-Farber Cancer Institute 360 Longwood Avenue Boston MA USA.
Nikki R KongCenter for Protein Degradation, Dana-Farber Cancer Institute 360 Longwood Avenue Boston MA USA.
Hu LiuCenter for Protein Degradation, Dana-Farber Cancer Institute 360 Longwood Avenue Boston MA USA.
Breanna L ZerfasCenter for Protein Degradation, Dana-Farber Cancer Institute 360 Longwood Avenue Boston MA USA.
Lyn H JonesCenter for Protein Degradation, Dana-Farber Cancer Institute 360 Longwood Avenue Boston MA USA.ORCID https://orcid.org/0000-0002-8388-5865
Harvard University · USDana-Farber Cancer Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Thalidomide and its derivatives are molecular glues that bind cereblon (CRBN), a component of an E3 ubiquitin ligase complex, and mediate protein interactions with neosubstrates resulting in their polyubiquitination and proteasomal degradation. The structural features of neosubstrate binding have been elucidated that highlight key interactions with a β-hairpin degron containing a glycine, which is present in a wide-range of proteins, including zinc-finger transcription factors such as IKZF1, and the translation termination factor GSPT1. Here, we profile 14 closely-related thalidomide derivatives in CRBN occupancy, and IKZF1 and GSPT1 degradation cell-based assays, and use crystal structures, computational docking and molecular dynamics to delineate subtle structure-activity relationships. Our findings will enable the rational design of CRBN modulators in the future, and help avoid the degradation of GSPT1 which is broadly cytotoxic.

Identifiers

PMID36970148
PMCPMC10034078
OpenAlexW4318023087

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.