Evidence map›Paper›PMID 36968522›Full record

ArticleCancer informatics2023

Identification of Prognostic Biomarkers for Breast Cancer Metastasis Using Penalized Additive Hazards Regression Model.

Leili Tapak, Omid Hamidi, Payam Amini, Saeid Afshar, Siamak Salimy, Irina Dinu

Open access · goldAbstract read
In one paragraph

Article in Cancer informatics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 2 countries.

Leili TapakDepartment of Biostatistics, School of Public Health and Modeling of Noncommunicable Diseases Research Center, Hamadan University of Medical Sciences, Hamadan, Iran.
Omid HamidiDepartment of Science, Hamedan University of Technology, Hamedan, Iran.
Payam AminiDepartment of Biostatistics, School of Public Health, Iran University of Medical Sciences, Tehran, Iran.
Saeid AfsharResearch Center for Molecular Medicine, Hamadan University of Medical Sciences, Hamadan, Iran.
Siamak SalimyLaboratory of System Biology and Bioinformatics (LBB), Department of Bioinformatics, University of Tehran, Kish, Iran.
Irina DinuSchool of Public Health, University of Alberta, Edmonton, AB, Canada.
Hamedan University of Medical Sciences · IRHamedan University of Technology · IRIran University of Medical Sciences · IRUniversity of Alberta · CAUniversity of Tehran · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Breast cancer (BC) has been reported as one of the most common cancers diagnosed in females throughout the world. Survival rate of BC patients is affected by metastasis. So, exploring its underlying mechanisms and identifying related biomarkers to monitor BC relapse/recurrence using new statistical methods is essential. This study investigated the high-dimensional gene-expression profiles of BC patients using penalized additive hazards regression models. Methods: A publicly available dataset related to the time to metastasis in BC patients (GSE2034) was used. There was information of 22 283 genes expression profiles related to 286 BC patients. Penalized additive hazards regression models with different penalties, including LASSO, SCAD, SICA, MCP and Elastic net were used to identify metastasis related genes. Results: Five regression models with penalties were applied in the additive hazards model and jointly found 9 genes including Conclusion: This study showed that

Indexed as

bioinformatics analysisbiomarkerbreast neoplasmGene expression profilingmetastasisprognosis

Identifiers

PMID36968522
PMCPMC10034277
OpenAlexW4352997060

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.