Evidence map›Paper›PMID 36968440›Full record

ArticleBio-protocol2023

Fast Detection and Quantification of Interictal Spikes and Seizures in a Rodent Model of Epilepsy Using an Automated Algorithm.

Jackson J Kyle, Shaunik Sharma, Grant Tiarks, Saul Rodriguez, Alexander G Bassuk

Open access · diamondAbstract read
In one paragraph

Article in Bio-protocol, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Unveiling the Multifaceted Problems Associated with Dysrhythmia.International journal of molecular sciences · 2023
    Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Jackson J KyleTraumatic Brain Injury and Epilepsy Research Laboratory, Department of Pediatrics, 2040 Medical Laboratories, Carver College of Medicine, University of Iowa, Iowa City, Iowa 52242, United States.
Shaunik SharmaTraumatic Brain Injury and Epilepsy Research Laboratory, Department of Pediatrics, 2040 Medical Laboratories, Carver College of Medicine, University of Iowa, Iowa City, Iowa 52242, United States.
Grant TiarksTraumatic Brain Injury and Epilepsy Research Laboratory, Department of Pediatrics, 2040 Medical Laboratories, Carver College of Medicine, University of Iowa, Iowa City, Iowa 52242, United States.
Saul RodriguezTraumatic Brain Injury and Epilepsy Research Laboratory, Department of Pediatrics, 2040 Medical Laboratories, Carver College of Medicine, University of Iowa, Iowa City, Iowa 52242, United States.
Alexander G BassukTraumatic Brain Injury and Epilepsy Research Laboratory, Department of Pediatrics, 2040 Medical Laboratories, Carver College of Medicine, University of Iowa, Iowa City, Iowa 52242, United States.
University of Iowa · US

Funding

University of Iowa Hawkeye Intellectual and Developmental Disabilities Research Center (Hawk-IDDRC)P50HD103556 · NICHD · UNIVERSITY OF IOWA · PI EDWIN TED G. ABEL, Lane Strathearn · 2021 to 2026
$8.5M
Exploring Novel Epilepsy PathwaysR01NS098590 · NINDS · UNIVERSITY OF IOWA · PI BASSUK, ALEXANDER G · 2016 to 2020
$2.8M
NICHD NIH HHS P50 HD103556NINDS NIH HHS R01 NS098590
6 · The paper itself

Abstract

The electroencephalogram (EEG) is a powerful tool for analyzing neural activity in various neurological disorders, both in animals and in humans. This technology has enabled researchers to record the brain's abrupt changes in electrical activity with high resolution, thus facilitating efforts to understand the brain's response to internal and external stimuli. The EEG signal acquired from implanted electrodes can be used to precisely study the spiking patterns that occur during abnormal neural discharges. These patterns can be analyzed in conjunction with behavioral observations and serve as an important means for accurate asses sment and quantification of behavioral and electrographic seizures. Numerous algorithms have been developed for the automated quantification of EEG data; however, many of these algorithms were developed with outdated programming languages and require robust computational hardware to run effectively. Additionally, some of these programs require substantial computation time, reducing the relative benefits of automation. Thus, we sought to develop an automated EEG algorithm that was programmed using a familiar programming language (MATLAB), and that could run efficiently without extensive computational demands. This algorithm was developed to quantify interictal spikes and seizures in mice that were subjected to traumatic brain injury. Although the algorithm was designed to be fully automated, it can be operated manually, and all the parameters for EEG activity detection can be easily modified for broad data analysis. Additionally, the algorithm is capable of processing months of lengthy EEG datasets in the order of minutes to hours, reducing both analysis time and errors introduced through manual-based processing.

Indexed as

AlgorithmAutomatedEEGInterictal SpikesMATLABSeizures

Identifiers

PMID36968440
PMCPMC10031526
OpenAlexW4327793264

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.