Evidence map›Paper›PMID 36968243›Full record

ArticleFrontiers in cellular and infection microbiology2022

Efficient isolation of rare B cells using next-generation antigen barcoding.

Jonathan Hurtado, Claudia Flynn, Jeong Hyun Lee, Eugenia C Salcedo, Christopher A Cottrell, Patrick D Skog, Dennis R Burton, David Nemazee, William R Schief, Elise Landais and 2 more

Full text read
In one paragraph

Article in Frontiers in cellular and infection microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
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  6. Review
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  8. Review
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  11. Monoclonal Antibody Generation Using Single B Cell Screening for Treating Infectious Diseases.BioDrugs : clinical immunotherapeutics, biopharmaceuticals and gene therapy · 2024
    Review
  12. Article
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Jonathan HurtadoDepartment of Immunology and Microbiology, Scripps Research, La Jolla, CA, United States.
Claudia FlynnDepartment of Immunology and Microbiology, Scripps Research, La Jolla, CA, United States.
Jeong Hyun LeeConsortium for HIV/AIDS Vaccine Development, Scripps Research, La Jolla, CA, United States.
Eugenia C SalcedoConsortium for HIV/AIDS Vaccine Development, Scripps Research, La Jolla, CA, United States.
Christopher A CottrellDepartment of Immunology and Microbiology, Scripps Research, La Jolla, CA, United States.
Patrick D SkogDepartment of Immunology and Microbiology, Scripps Research, La Jolla, CA, United States.
Dennis R BurtonDepartment of Immunology and Microbiology, Scripps Research, La Jolla, CA, United States.
David NemazeeDepartment of Immunology and Microbiology, Scripps Research, La Jolla, CA, United States.
William R SchiefDepartment of Immunology and Microbiology, Scripps Research, La Jolla, CA, United States.
Elise LandaisConsortium for HIV/AIDS Vaccine Development, Scripps Research, La Jolla, CA, United States.
Devin SokConsortium for HIV/AIDS Vaccine Development, Scripps Research, La Jolla, CA, United States.
Bryan BrineyDepartment of Immunology and Microbiology, Scripps Research, La Jolla, CA, United States.

Funding

Identification of neutralizing epitopes on SARS-CoV-2 spike for design of vaccines and small-molecule antiviralsUM1AI144462 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI BURTON, DENNIS R. · 2019 to 2025
$201.6M
UC San Diego Clinical and Translational Research InstituteUL1TR001442 · NCATS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI FIRESTEIN, GARY S, HOGARTH, MICHAEL · 2015 to 2024
$88.3M
VirologyP30AI036214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI David Mitchell Smith · 1994 to 2026
$78.4M
Technology CoreU19AI135995 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI Kristian Graugaard Andersen · 2018 to 2026
$32.0M
The Multi-omics Vaccine Evaluation (MOVE) ConsortiumP01AI177683 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI Bryan Briney · 2023 to 2026
$9.0M
PATHOGENESIS AND IMMUNOLOGY OF DISEASET32AI007244 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI NEMAZEE, DAVID · 1985 to 2022
$8.8M
High-resolution definition of B cell responses to HIV Env for immunogen designR01AI102766 · NIAID · UNIV OF MARYLAND, COLLEGE PARK · PI LI, YUXING · 2013 to 2024
$6.6M
Anti-flavivirus B cell response analysis to aid vaccine designR01AI175439 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI Yuxing Li · 2023 to 2026
$3.1M
High-resolution deconvolution of selection effects on the composition of the B cell repertoireR35GM133682 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI BRINEY, BRYAN · 2019 to 2023
$2.4M
NCATS NIH HHS UL1 TR001442NIAID NIH HHS P01 AI177683NIAID NIH HHS P30 AI036214NIAID NIH HHS R01 AI102766NIAID NIH HHS R01 AI175439NIAID NIH HHS T32 AI007244NIAID NIH HHS U19 AI135995NIAID NIH HHS UM1 AI144462NIGMS NIH HHS R35 GM133682
6 · The paper itself

Abstract

The ability to efficiently isolate antigen-specific B cells in high throughput will greatly accelerate the discovery of therapeutic monoclonal antibodies (mAbs) and catalyze rational vaccine development. Traditional mAb discovery is a costly and labor-intensive process, although recent advances in single-cell genomics using emulsion microfluidics allow simultaneous processing of thousands of individual cells. Here we present a streamlined method for isolation and analysis of large numbers of antigen-specific B cells, including next generation antigen barcoding and an integrated computational framework for B cell multi-omics. We demonstrate the power of this approach by recovering thousands of antigen-specific mAbs, including the efficient isolation of extremely rare precursors of VRC01-class and IOMA-class broadly neutralizing HIV mAbs.

Indexed as

Antibodies, NeutralizingHIV-1Antibodies, MonoclonalAntigensB-LymphocytesHIV AntibodiesAntibodies, MonoclonalAntibodies, NeutralizingAntigensHIV AntibodiesAIRRantibodyBCRhumoral immunologyimmunologymulti-omicssingle cell

Identifiers

PMID36968243
PMCPMC10036767

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.