Evidence map›Paper›PMID 36966128›Full record

ArticleNature communications2023

Unnatural activities and mechanistic insights of cytochrome P450 PikC gained from site-specific mutagenesis by non-canonical amino acids.

Yunjun Pan, Guobang Li, Ruxin Liu, Jiawei Guo, Yunjie Liu, Mingyu Liu, Xingwang Zhang, Luping Chi, Kangwei Xu, Ruibo Wu and 4 more

Open access · goldFull text read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Yunjun Pan *State Key Laboratory of Microbial Technology, Shandong University, Qingdao, Shandong, 266237, China.ORCID 0000-0003-2850-4166
Guobang Li *State Key Laboratory of Microbial Technology, Shandong University, Qingdao, Shandong, 266237, China.
Ruxin LiuState Key Laboratory of Microbial Technology, Shandong University, Qingdao, Shandong, 266237, China.ORCID 0000-0001-9858-5112
Jiawei GuoState Key Laboratory of Microbial Technology, Shandong University, Qingdao, Shandong, 266237, China.ORCID 0000-0001-5921-0932
Yunjie LiuState Key Laboratory of Microbial Technology, Shandong University, Qingdao, Shandong, 266237, China.
Mingyu LiuState Key Laboratory of Microbial Technology, Shandong University, Qingdao, Shandong, 266237, China.ORCID 0000-0001-8096-486X
Xingwang ZhangState Key Laboratory of Microbial Technology, Shandong University, Qingdao, Shandong, 266237, China.ORCID 0000-0003-1346-1183
Luping ChiState Key Laboratory of Microbial Technology, Shandong University, Qingdao, Shandong, 266237, China.ORCID 0000-0003-4544-7239
Kangwei XuSchool of Pharmaceutical Sciences, Sun Yat-sen University, Guangzhou, 510006, China.
Ruibo WuSchool of Pharmaceutical Sciences, Sun Yat-sen University, Guangzhou, 510006, China.ORCID 0000-0002-6944-8482
Yuzhong ZhangState Key Laboratory of Microbial Technology, Shandong University, Qingdao, Shandong, 266237, China.ORCID 0000-0002-2017-1005
Yuezhong LiState Key Laboratory of Microbial Technology, Shandong University, Qingdao, Shandong, 266237, China.ORCID 0000-0001-8336-6638
Xiang GaoState Key Laboratory of Microbial Technology, Shandong University, Qingdao, Shandong, 266237, China. xgao@email.sdu.edu.cn.ORCID 0000-0001-6397-5639
Shengying LiState Key Laboratory of Microbial Technology, Shandong University, Qingdao, Shandong, 266237, China. lishengying@sdu.edu.cn.ORCID 0000-0002-5244-870X
Shandong University · CNSun Yat-sen University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cytochrome P450 enzymes play important roles in the biosynthesis of macrolide antibiotics by mediating a vast variety of regio- and stereoselective oxidative modifications, thus improving their chemical diversity, biological activities, and pharmaceutical properties. Tremendous efforts have been made on engineering the reactivity and selectivity of these useful biocatalysts. However, the 20 proteinogenic amino acids cannot always satisfy the requirement of site-directed/random mutagenesis and rational protein design of P450 enzymes. To address this issue, herein, we practice the semi-rational non-canonical amino acid mutagenesis for the pikromycin biosynthetic P450 enzyme PikC, which recognizes its native macrolide substrates with a 12- or 14-membered ring macrolactone linked to a deoxyamino sugar through a unique sugar-anchoring mechanism. Based on a semi-rationally designed substrate binding strategy, non-canonical amino acid mutagenesis at the His238 position enables the unnatural activities of several PikC mutants towards the macrolactone precursors without any sugar appendix. With the aglycone hydroxylating activities, the pikromycin biosynthetic pathway is rewired by the representative mutant PikC

Indexed as

Amino AcidsCytochrome P-450 Enzyme SystemAnti-Bacterial AgentsMacrolidesMutagenesis, Site-DirectedSubstrate SpecificityAmino AcidsAnti-Bacterial AgentsCytochrome P-450 Enzyme SystemMacrolidespicromycin

Identifiers

PMID36966128
PMCPMC10039885
OpenAlexW4360946940

What OpenQuestion holds

Textfull text, public
LicenceCC BY
measurements read111
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.