Evidence map›Paper›PMID 36962806›Full record

ArticlePLOS global public health2022

First cases of SARS-CoV-2 infection and secondary transmission in Kisumu, Kenya.

Beth A Tippett Barr, Amy Herman-Roloff, Margaret Mburu, Pamela M Murnane, Norton Sang, Elizabeth Bukusi, Elizabeth Oele, Albert Odhiambo, Jayne Lewis-Kulzer, Clayton O Onyango and 11 more

Open access · goldFull text read
In one paragraph

Article in PLOS global public health, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 5 institutions in 2 countries.

Beth A Tippett BarrU.S. Centers for Disease Control and Prevention, Kisumu, Kenya.ORCID https://orcid.org/0000-0001-5877-2968
Amy Herman-RoloffU.S. Centers for Disease Control and Prevention, Kisumu, Kenya.
Margaret MburuKenya Medical Research Institute, Kisumu, Kenya.
Pamela M MurnaneUniversity of California, San Francisco, San Francisco, CA, United States of America.
Norton SangKenya Medical Research Institute, Nairobi, Kenya.
Elizabeth BukusiKenya Medical Research Institute, Nairobi, Kenya.
Elizabeth OeleKisumu County Department of Health, Kisumu, Kenya.
Albert OdhiamboKisumu County Department of Health, Kisumu, Kenya.
Jayne Lewis-KulzerUniversity of California, San Francisco, San Francisco, CA, United States of America.
Clayton O OnyangoU.S. Centers for Disease Control and Prevention, Kisumu, Kenya.
Elizabeth HunspergerU.S. Centers for Disease Control and Prevention, Kisumu, Kenya.
Francesca OdhiamboKenya Medical Research Institute, Nairobi, Kenya.
Rachel H JosephU.S. Centers for Disease Control and Prevention, Kisumu, Kenya.
Peninah MunyuaU.S. Centers for Disease Control and Prevention, Kisumu, Kenya.
Kephas OthienoKenya Medical Research Institute, Kisumu, Kenya.
Edwin MulwaKenya Medical Research Institute, Nairobi, Kenya.ORCID https://orcid.org/0000-0002-1932-3868
Victor AkeloU.S. Centers for Disease Control and Prevention, Kisumu, Kenya.
Erick MuokKenya Medical Research Institute, Kisumu, Kenya.
Marc BulterysU.S. Centers for Disease Control and Prevention, Kisumu, Kenya.
Charles NziokaMinistry of Health, Nairobi, Kenya.
Craig R CohenUniversity of California, San Francisco, San Francisco, CA, United States of America.
Centers for Disease Control and Prevention · KEKenya Medical Research Institute · KEUniversity of California, San Francisco · USGreat Lakes University of Kisumu · KEMinistry of Health · KE

Funding

Implementing a risk score to facilitate enhanced adherence support for pregnant and postpartum women at risk of viremiaK01MH119910 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MURNANE, PAMELA MAE · 2019 to 2023
$922k
NIMH NIH HHS K01 MH119910
6 · The paper itself

Abstract

We investigated the first 152 laboratory-confirmed SARS-CoV-2 cases (125 primary and 27 secondary) and their 248 close contacts in Kisumu County, Kenya. Conducted June 10-October 8, 2020, this study included interviews and sample collection at enrolment and 14-21 days later. Median age was 35 years (IQR 28-44); 69.0% reported COVID-19 related symptoms, most commonly cough (60.0%), headache (55.2%), fever (53.3%) and loss of taste or smell (43.8%). One in five were hospitalized, 34.4% >25 years of age had at least one comorbidity, and all deaths had comorbidities. Adults ≥25 years with a comorbidity were 3.15 (95% CI 1.37-7.26) times more likely to have been hospitalized or died than participants without a comorbidity. Infectious comorbidities included HIV, tuberculosis, and malaria, but no current cases of influenza, respiratory syncytial virus, dengue fever, leptospirosis or chikungunya were identified. Thirteen (10.4%) of the 125 primary infections transmitted COVID-19 to 27 close contacts, 158 (63.7%) of whom resided or worked within the same household. Thirty-one percent (4 of 13) of those who transmitted COVID-19 to secondary cases were health care workers; no known secondary transmissions occurred between health care workers. This rapid assessment early in the course of the COVID-19 pandemic identified some context-specific characteristics which conflicted with the national line-listing of cases, and which have been substantiated in the year since. These included over two-thirds of cases reporting the development of symptoms during the two weeks after diagnosis, compared to the 7% of cases reported nationally; over half of cases reporting headaches, and nearly half of all cases reporting loss of taste and smell, none of which were reported at the time by the World Health Organization to be common symptoms. This study highlights the importance of rapid in-depth assessments of outbreaks in understanding the local epidemiology and response measures required.

Identifiers

PMID36962806
PMCPMC10021778
OpenAlexW4295866436

What OpenQuestion holds

Textfull text, public
LicenceCC0
measurements read89
identifiers read9
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.