Evidence map›Paper›PMID 36960445›Full record

ArticlePatterns (New York, N.Y.)2023

Deep learning-based risk prediction for interventional clinical trials based on protocol design: A retrospective study.

Sohrab Ferdowsi, Julien Knafou, Nikolay Borissov, David Vicente Alvarez, Rahul Mishra, Poorya Amini, Douglas Teodoro

Abstract read
In one paragraph

Article in Patterns (New York, N.Y.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Analysis of eligibility criteria clusters based on large language models for clinical trial design.Journal of the American Medical Informatics Association : JAMIA · 2025
    Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sohrab FerdowsiDepartment of Radiology and Medical Informatics, University of Geneva, Geneva, Switzerland.
Julien KnafouGeneva School of Business Administration, HES-SO University of Applied Sciences and Arts of Western Switzerland, Geneva, Switzerland.
Nikolay BorissovClinical Trials Unit, University of Bern, Bern, Switzerland.
David Vicente AlvarezDepartment of Radiology and Medical Informatics, University of Geneva, Geneva, Switzerland.
Rahul MishraDepartment of Radiology and Medical Informatics, University of Geneva, Geneva, Switzerland.
Poorya AminiClinical Trials Unit, University of Bern, Bern, Switzerland.
Douglas TeodoroDepartment of Radiology and Medical Informatics, University of Geneva, Geneva, Switzerland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Success rate of clinical trials (CTs) is low, with the protocol design itself being considered a major risk factor. We aimed to investigate the use of deep learning methods to predict the risk of CTs based on their protocols. Considering protocol changes and their final status, a retrospective risk assignment method was proposed to label CTs according to low, medium, and high risk levels. Then, transformer and graph neural networks were designed and combined in an ensemble model to learn to infer the ternary risk categories. The ensemble model achieved robust performance (area under the receiving operator characteristic curve [AUROC] of 0.8453 [95% confidence interval: 0.8409-0.8495]), similar to the individual architectures but significantly outperforming a baseline based on bag-of-words features (0.7548 [0.7493-0.7603] AUROC). We demonstrate the potential of deep learning in predicting the risk of CTs from their protocols, paving the way for customized risk mitigation strategies during protocol design.

Indexed as

clinical trialsdeep learninggraph neural networksneural language modelsrisk predictiontext classificationtext miningtransformer-based language models

Identifiers

PMID36960445
PMCPMC10028430

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.