Evidence map›Paper›PMID 36959234›Full record

ArticleNPJ digital medicine2023

Weakly supervised deep learning to predict recurrence in low-grade endometrial cancer from multiplexed immunofluorescence images.

Daniel Jiménez-Sánchez, Álvaro López-Janeiro, María Villalba-Esparza, Mikel Ariz, Ece Kadioglu, Ivan Masetto, Virginie Goubert, Maria D Lozano, Ignacio Melero, David Hardisson and 2 more

Full text read
In one paragraph

Article in NPJ digital medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Guideline
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Deep Learning for Grading Endometrial Cancer.The American journal of pathology · 2024
    Article
  10. Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Daniel Jiménez-SánchezProgram of Solid Tumors and Biomarkers, Center for Applied Medical Research (CIMA), University of Navarra, Pamplona, Spain.
Álvaro López-JaneiroDepartment of Pathology, Clínica Universidad de Navarra, Pamplona, Spain.ORCID http://orcid.org/0000-0002-5744-3115
María Villalba-EsparzaDepartment of Pathology, Clínica Universidad de Navarra, Pamplona, Spain.
Mikel ArizProgram of Solid Tumors and Biomarkers, Center for Applied Medical Research (CIMA), University of Navarra, Pamplona, Spain.ORCID http://orcid.org/0000-0002-7328-1582
Ece KadiogluLunaphore Technologies SA, Tolochenaz, Switzerland.
Ivan MasettoAkoya Biosciences, Marlborough, MA, USA.
Virginie GoubertAkoya Biosciences, Marlborough, MA, USA.
Maria D LozanoDepartment of Pathology, Clínica Universidad de Navarra, Pamplona, Spain.
Ignacio MeleroNavarra Institute for Health Research (IdISNA), Pamplona, Spain.
David HardissonDepartment of Pathology, Hospital Universitario La Paz, IdiPAZ, Madrid, Spain.ORCID http://orcid.org/0000-0002-2183-3699
Carlos Ortiz-de-SolórzanoProgram of Solid Tumors and Biomarkers, Center for Applied Medical Research (CIMA), University of Navarra, Pamplona, Spain.ORCID http://orcid.org/0000-0001-8720-0205
Carlos E de AndreaDepartment of Pathology, Clínica Universidad de Navarra, Pamplona, Spain. ceandrea@unav.es.ORCID http://orcid.org/0000-0002-7628-8050

Funding

Ministry of Economy and Competitiveness | Instituto de Salud Carlos III (Institute of Health Carlos III) PI17/01723 and PI21/00920
6 · The paper itself

Abstract

Predicting recurrence in low-grade, early-stage endometrial cancer (EC) is both challenging and clinically relevant. We present a weakly-supervised deep learning framework, NaroNet, that can learn, without manual expert annotation, the complex tumor-immune interrelations at three levels: local phenotypes, cellular neighborhoods, and tissue areas. It uses multiplexed immunofluorescence for the simultaneous visualization and quantification of CD68 + macrophages, CD8 + T cells, FOXP3 + regulatory T cells, PD-L1/PD-1 protein expression, and tumor cells. We used 489 tumor cores from 250 patients to train a multilevel deep-learning model to predict tumor recurrence. Using a tenfold cross-validation strategy, our model achieved an area under the curve of 0.90 with a 95% confidence interval of 0.83-0.95. Our model predictions resulted in concordance for 96,8% of cases (κ = 0.88). This method could accurately assess the risk of recurrence in EC, outperforming current prognostic factors, including molecular subtyping.

Identifiers

PMID36959234
PMCPMC10036616

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.