Evidence map›Paper›PMID 36959194›Full record

ArticleNature communications2023

Characterization of SARS-CoV-2 Omicron BA.2.75 clinical isolates.

Ryuta Uraki, Shun Iida, Peter J Halfmann, Seiya Yamayoshi, Yuichiro Hirata, Kiyoko Iwatsuki-Horimoto, Maki Kiso, Mutsumi Ito, Yuri Furusawa, Hiroshi Ueki and 20 more

Open access · goldFull text read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 29 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors at 6 institutions in 2 countries.

Ryuta Uraki *Division of Virology, Institute of Medical Science, University of Tokyo, Tokyo, 108-8639, Japan.ORCID 0000-0003-0890-1922
Shun Iida *Department of Pathology, National Institute of Infectious Diseases, Tokyo, 162-8640, Japan.ORCID 0000-0003-2258-9031
Peter J Halfmann *Influenza Research Institute, Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI, 53711, USA.
Seiya Yamayoshi *Division of Virology, Institute of Medical Science, University of Tokyo, Tokyo, 108-8639, Japan.ORCID 0000-0001-7768-5157
Yuichiro HirataDepartment of Pathology, National Institute of Infectious Diseases, Tokyo, 162-8640, Japan.
Kiyoko Iwatsuki-HorimotoDivision of Virology, Institute of Medical Science, University of Tokyo, Tokyo, 108-8639, Japan.ORCID 0000-0002-8266-020X
Maki KisoDivision of Virology, Institute of Medical Science, University of Tokyo, Tokyo, 108-8639, Japan.
Mutsumi ItoDivision of Virology, Institute of Medical Science, University of Tokyo, Tokyo, 108-8639, Japan.
Yuri FurusawaDivision of Virology, Institute of Medical Science, University of Tokyo, Tokyo, 108-8639, Japan.
Hiroshi UekiDivision of Virology, Institute of Medical Science, University of Tokyo, Tokyo, 108-8639, Japan.ORCID 0000-0002-6557-0771
Yuko Sakai-TagawaDivision of Virology, Institute of Medical Science, University of Tokyo, Tokyo, 108-8639, Japan.
Makoto KurodaInfluenza Research Institute, Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI, 53711, USA.
Tadashi MaemuraInfluenza Research Institute, Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI, 53711, USA.
Taksoo KimInfluenza Research Institute, Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI, 53711, USA.
Sohtaro MineDepartment of Pathology, National Institute of Infectious Diseases, Tokyo, 162-8640, Japan.
Noriko IwamotoDisease Control and Prevention Center, National Center for Global Health and Medicine Hospital, Tokyo, 162-8655, Japan.
Rong LiDepartment of Animal, Dairy, and Veterinary Sciences, College of Agriculture and Applied Sciences, Utah State University, Logan, UT, 84322, USA.
Yanan LiuDepartment of Animal, Dairy, and Veterinary Sciences, College of Agriculture and Applied Sciences, Utah State University, Logan, UT, 84322, USA.
Deanna LarsonDepartment of Animal, Dairy, and Veterinary Sciences, College of Agriculture and Applied Sciences, Utah State University, Logan, UT, 84322, USA.
Shuetsu FukushiDepartment of Virology 1, National Institute of Infectious Diseases, Musashimurayama, Tokyo, 208-0011, Japan.
Shinji WatanabeCenter for Influenza and Respiratory Virus Research, National Institute of Infectious Diseases, Musashimurayama, Tokyo, 208-0011, Japan.
Ken MaedaDepartment of Veterinary Science, National Institute of Infectious Diseases, Tokyo, 162-8640, Japan.ORCID 0000-0002-3488-5439
Zhongde WangDepartment of Animal, Dairy, and Veterinary Sciences, College of Agriculture and Applied Sciences, Utah State University, Logan, UT, 84322, USA.ORCID 0000-0003-2441-4729
Norio OhmagariDisease Control and Prevention Center, National Center for Global Health and Medicine Hospital, Tokyo, 162-8655, Japan.
James TheilerSpace Data Science and Systems, Los Alamos National Laboratory, Los Alamos, NM, 87545, USA.
Will FischerTheoretical Biology and Biophysics, Los Alamos National Laboratory, Los Alamos, NM, 87545, USA.ORCID 0000-0003-4579-4062
Bette KorberTheoretical Biology and Biophysics, Los Alamos National Laboratory, Los Alamos, NM, 87545, USA. btk@lanl.gov.ORCID 0000-0002-2026-5757
Masaki ImaiDivision of Virology, Institute of Medical Science, University of Tokyo, Tokyo, 108-8639, Japan. mimai@ims.u-tokyo.ac.jp.ORCID 0000-0001-6988-1975
Tadaki SuzukiDepartment of Pathology, National Institute of Infectious Diseases, Tokyo, 162-8640, Japan. tksuzuki@niid.go.jp.ORCID 0000-0002-3820-9542
Yoshihiro KawaokaDivision of Virology, Institute of Medical Science, University of Tokyo, Tokyo, 108-8639, Japan. yoshihiro.kawaoka@wisc.edu.ORCID 0000-0001-5061-8296
Tokyo University of Science · JPNational Institute of Infectious Diseases · JPUniversity of Wisconsin–Madison · USUtah State University · USLos Alamos National Laboratory · USNational Center for Global Health and Medicine · JP

Funding

NIAID Centers of Excellence for Influenza Research and Response: Universal Influenza Vaccine Research Activities75N93021C00014 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI GARCIA-SASTRE, ADOLFO · 2021 to 2025
$62.6M
Project 4: Computational panbetaCoV immunogen designP01AI158571 · NIAID · DUKE UNIVERSITY · PI HENDERSON, RORY · 2021 to 2023
$28.0M
Optimizing glycan shield coverage, germline B cell receptor binding and epitope diversity of V2-apex targeted HIV-1 Env immunogensR37AI150590 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI Beatrice H Hahn · 2019 to 2026
$6.9M
NIAID NIH HHS 75N93021C00014NIAID NIH HHS P01 AI158571NIAID NIH HHS R37 AI150590
6 · The paper itself

Abstract

The prevalence of the Omicron subvariant BA.2.75 rapidly increased in India and Nepal during the summer of 2022, and spread globally. However, the virological features of BA.2.75 are largely unknown. Here, we evaluated the replicative ability and pathogenicity of BA.2.75 clinical isolates in Syrian hamsters. Although we found no substantial differences in weight change among hamsters infected with BA.2, BA.5, or BA.2.75, the replicative ability of BA.2.75 in the lungs is higher than that of BA.2 and BA.5. Of note, BA.2.75 causes focal viral pneumonia in hamsters, characterized by patchy inflammation interspersed in alveolar regions, which is not observed in BA.5-infected hamsters. Moreover, in competition assays, BA.2.75 replicates better than BA.5 in the lungs of hamsters. These results suggest that BA.2.75 can cause more severe respiratory disease than BA.5 and BA.2 in a hamster model and should be closely monitored.

Indexed as

COVID-19AnimalsBiological AssayCricetinaeDNA ReplicationIndiaMesocricetusSARS-CoV-2

Identifiers

PMID36959194
PMCPMC10035475
OpenAlexW4360610497

What OpenQuestion holds

Textfull text, public
LicenceCC BY
measurements read25
identifiers read1
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.