Evidence map›Paper›PMID 36952500›Full record

ArticlePloS one2023

Fitting and validation of an agent-based model for COVID-19 case forecasting in workplaces and universities.

Vignesh Kumaresan, Niranjan Balachandar, Sarah F Poole, Lance J Myers, Paul Varghese, Vindell Washington, Yugang Jia, Vivian S Lee

Open access · goldFull text read
In one paragraph

Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.8field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. COVID-19 trends across borders: Identifying correlations among countries.The Journal of international medical research · 2024
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Vignesh KumaresanVerily Life Sciences, South San Francisco, California, United States of America.ORCID 0000-0002-9086-2397
Niranjan BalachandarVerily Life Sciences, South San Francisco, California, United States of America.ORCID 0000-0002-8961-2542
Sarah F PooleVerily Life Sciences, South San Francisco, California, United States of America.ORCID 0000-0003-0528-0577
Lance J MyersVerily Life Sciences, South San Francisco, California, United States of America.
Paul VargheseVerily Life Sciences, South San Francisco, California, United States of America.
Vindell WashingtonVerily Life Sciences, South San Francisco, California, United States of America.
Yugang JiaVerily Life Sciences, South San Francisco, California, United States of America.
Vivian S LeeVerily Life Sciences, South San Francisco, California, United States of America.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

COVID-19 forecasting models have been critical in guiding decision-making on surveillance testing, social distancing, and vaccination requirements. Beyond influencing public health policies, an accurate COVID-19 forecasting model can impact community spread by enabling employers and university leaders to adapt worksite policies and practices to contain or mitigate outbreaks. While many such models have been developed for COVID-19 forecasting at the national, state, county, or city level, only a few models have been developed for workplaces and universities. Furthermore, COVID-19 forecasting models have rarely been validated against real COVID-19 case data. Here we present the systematic parameter fitting and validation of an agent-based compartment model for the forecasting of daily COVID-19 cases in single-site workplaces and universities with real-world data. Our approaches include manual fitting, where initial model parameters are chosen based on historical data, and automated fitting, where parameters are chosen based on candidate case trajectory simulations that result in best fit to prevalence estimation data. We use a 14-day fitting window and validate our approaches on 7- and 14-day testing windows with real COVID-19 case data from one employer. Our manual and automated fitting approaches accurately predicted COVID-19 case trends and outperformed the baseline model (no parameter fitting) across multiple scenarios, including a rising case trajectory (RMSLE values: 2.627 for baseline, 0.562 for manual fitting, 0.399 for automated fitting) and a decreasing case trajectory (RMSLE values: 1.155 for baseline, 0.537 for manual fitting, 0.778 for automated fitting). Our COVID-19 case forecasting model allows decision-makers at workplaces and universities to proactively respond to case trend forecasts, mitigate outbreaks, and promote safety.

Indexed as

COVID-19Disease OutbreaksForecastingHumansModels, StatisticalPublic PolicyUniversities

Identifiers

PMID36952500
PMCPMC10035834
OpenAlexW4360609306

What OpenQuestion holds

Textfull text, public
LicenceCC BY
measurements read2
identifiers read5
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.