Evidence map›Paper›PMID 36952017›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2023

Updated guidelines for gene nomenclature in wheat.

S A Boden, R A McIntosh, C Uauy, S G Krattinger, J Dubcovsky, W J Rogers, X C Xia, E D Badaeva, A R Bentley, G Brown-Guedira and 19 more

Full text read
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. International journal of molecular sciences · 2026
    Article
  9. Genomic Insights into Winter Wheat Breeding for Severely Cold Climates.International journal of molecular sciences · 2026
    Article
  10. Article
  11. Article
  12. The pyramiding ofFrontiers in plant science · 2026
    Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Fine-mapping theMolecular breeding : new strategies in plant improvement · 2025
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors.

S A BodenSchool of Agriculture, Food and Wine, Waite Research Institute, University of Adelaide, Glen Osmond, SA, 5064, Australia. scott.boden@adelaide.edu.au.ORCID http://orcid.org/0000-0001-5297-4067
R A McIntoshSchool of Life and Environmental Sciences, University of Sydney, Plant Breeding Institute, 107 Cobbitty Road, Cobbitty, NSW, 2570, Australia. Robert.mcintosh@sydney.edu.au.
C UauyJohn Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK. cristobal.uauy@jic.ac.uk.
S G KrattingerPlant Science Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia.
J DubcovskyDepartment of Plant Science, University of California, Davis, CA, 95616, USA.
W J RogersDepartamento de Biología Aplicada, Facultad de Agronomía (CIISAS, CIC-BIOLAB AZUL, CONICET-INBIOTEC, CRESCA), Universidad Nacional del Centro de La Provincia de Buenos Aires, Av. República Italia 780, C.C. 47, (7300), Azul, Provincia de Buenos Aires, Argentina.
X C XiaInstitute of Crop Science, National Wheat Improvement Centre, Chinese Academy of Agricultural Sciences, 12 Zhongguancun South St, Beijing, 100081, China.
E D BadaevaN.I. Vavilov Institute of General Genetics, Russian Academy of Sciences, Moscow, Russia, 119991.
A R BentleyInternational Maize and Wheat Improvement Center (CIMMYT), Apdo Postal 6-641, Mexico, D.F., Mexico.
G Brown-GuediraUSDA-ARS Plant Science Research, North Carolina State University, William Hall 4114A, Raleigh, NC, 27695, USA.
M CaccamoNIAB, 93 Lawrence Weaver Road, Cambridge, CB3 0LE, UK.
L CattivelliCouncil for Agricultural Research and Economics (CREA), Research Centre for Genomics and Bioinformatics, Via S. Protaso, 302, 29017, Fiorenzuola d'Arda, PC, Italy.
P ChhunejaSchool of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, 141 004, India.
J CockramNIAB, 93 Lawrence Weaver Road, Cambridge, CB3 0LE, UK.
B Contreras-MoreiraEstación Experimental de Aula Dei (EEAD-CSIC), Zaragossa, Spain.
S DreisigackerInternational Maize and Wheat Improvement Center (CIMMYT), Apdo Postal 6-641, Mexico, D.F., Mexico.
D EdwardsSchool of Biological Sciences, University of Western Australia, Perth, 6009, Australia.
F G GonzálezInstituto Nacional de Tecnología Agropecuaria (INTA), EEA Pergamino, y Centro de Investigaciones y Transferencia del Noroeste de la Provincia de Buenos Aires (CITNOBA, CONICET-UNNOBA-UNSADA), Ruta 32. Km 4.5, CP 2700, Pergamino, Buenos Aires, Argentina.
C GuzmánDepartment of Genetics, School of Agricultural and Forest Engineering, Universidad de Córdoba, Córdoba, Spain.
T M IkedaAgroecosystem and Crop Breeding Group, Western Region Agricultural Research Center, Fukuyama, Hiroshima, 721-8514, Japan.
I KarsaiCentre for Agricultural Research, ELKH, 2462, Martonvasar, Hungary.
S NasudaLaboratory of Plant Breeding, Graduate School of Agriculture, Kyoto University, Kyoto, 606-8224, Japan.
C PozniakCrop Development Centre and Department of Plant Sciences, University of Saskatchewan, 51 Campus Drive, Saskatoon, SK, S7N 5A8, Canada.
R PrinsCenGen Pty Ltd., Worcester, 6850, South Africa.
T Z SenCrop Improvement and Genetics Research Unit, USDA-ARS, 800 Buchanan St, Albany, CA, 94710, USA.
P SilvaPrograma Nacional de Cultivos de Secano, Instituto Nacional de Investigación Agropecuaria (INIA), Estación Experimental La Estanzuela, 70006, Colonia, Uruguay.
H SimkovaInstitute of Experimental Botany of the Czech Academy of Sciences, Šlechtitelů 31, 779 00, Olomouc, Czech Republic.
Y ZhangState Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, Institute of Plant Biology, School of Life Sciences, Fudan University, Shanghai, 200438, China.
Wheat Initiative

Funding

Agencia Nacional de Investigación e Innovación FSA_1_2013_1_12980Agencia Nacional de Investigación e Innovación FSA_1_2018_1_152918Agencia Nacional de Investigación e Innovación PR_FSA_2009_1_1369Agencia Nacional de Promoción de la Investigacion PICT 2019-03256Agricultural Research Service 2030-21000-024-00DAustralian Research Council DP200100762Australian Research Council DP210100296Australian Research Council DP210103744Australian Research Council FT210100810Biotechnology and Biological Sciences Research Council BB/P010741/1Biotechnology and Biological Sciences Research Council BB/P016855/1Biotechnology and Biological Sciences Research Council BBS/OS/NW/000016European Regional Development Fund CZ.02.1.01/0.0/0.0/16_019/0000827Genome Canada DeliveryGenome Canada DiscoveryGenome Canada DiversityGenome Canada DomesticationInnovation and Technology Ministry GINOP-2.3.2-15-2016-00029Instituto Nacional de Investigación Agropecuaria INIA_L1_CS_35Instituto Nacional de Investigación Agropecuaria INIA_L1_CS_39Instituto Nacional de Investigacion Agropecuaria, Uruguay INTA-PD-E3-I060Ministerio de Ciencia e Innovación RYC-2017-21891National Institute of Food and Agriculture 2022-68013-36439Partnership for Research and Innovation in the Mediterranean Area CerealMedPrograma Estatal de l+D+i Orientada a los Retos de la Sociedad PCI2019-103526UNCPBA 03/A215
6 · The paper itself

Abstract

key messageHere, we provide an updated set of guidelines for naming genes in wheat that has been endorsed by the wheat research community. The last decade has seen a proliferation in genomic resources for wheat, including reference- and pan-genome assemblies with gene annotations, which provide new opportunities to detect, characterise, and describe genes that influence traits of interest. The expansion of genetic information has supported growth of the wheat research community and catalysed strong interest in the genes that control agronomically important traits, such as yield, pathogen resistance, grain quality, and abiotic stress tolerance. To accommodate these developments, we present an updated set of guidelines for gene nomenclature in wheat. These guidelines can be used to describe loci identified based on morphological or phenotypic features or to name genes based on sequence information, such as similarity to genes characterised in other species or the biochemical properties of the encoded protein. The updated guidelines provide a flexible system that is not overly prescriptive but provides structure and a common framework for naming genes in wheat, which may be extended to related cereal species. We propose these guidelines be used henceforth by the wheat research community to facilitate integration of data from independent studies and allow broader and more efficient use of text and data mining approaches, which will ultimately help further accelerate wheat research and breeding.

Indexed as

Plant BreedingTriticumEdible GrainGenes, PlantPhenotype

Identifiers

PMID36952017
PMCPMC10036449

What OpenQuestion holds

Textfull text, public
LicenceCC BY
measurements read8
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.