Evidence map›Paper›PMID 36950679›Full record

ArticleFrontiers in endocrinology2023

Enhanced contrast synchrotron X-ray microtomography for describing skeleton-associated soft tissue defects in zebrafish mutants.

Jake Leyhr, Sophie Sanchez, Kathleen N Dollman, Paul Tafforeau, Tatjana Haitina

Open access · goldFull text read
In one paragraph

Article in Frontiers in endocrinology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

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  8. Standardization of bone morphometry and mineral density assessments in zebrafish and other small laboratory fishes using X-ray radiography and micro-computed tomography.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Jake LeyhrDepartment of Organismal Biology, Uppsala University, Uppsala, Sweden.
Sophie SanchezDepartment of Organismal Biology, Uppsala University, Uppsala, Sweden.
Kathleen N DollmanEuropean Synchrotron Radiation Facility, Grenoble, France.
Paul TafforeauEuropean Synchrotron Radiation Facility, Grenoble, France.
Tatjana HaitinaDepartment of Organismal Biology, Uppsala University, Uppsala, Sweden.
European Synchrotron Radiation Facility · FRUppsala University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Detailed histological analyses are desirable for zebrafish mutants that are models for human skeletal diseases, but traditional histological techniques are limited to two-dimensional thin sections with orientations highly dependent on careful sample preparation. On the other hand, techniques that provide three-dimensional (3D) datasets including µCT scanning are typically limited to visualizing the bony skeleton and lack histological resolution. We combined diffusible iodine-based contrast enhancement (DICE) and propagation phase-contrast synchrotron radiation micro-computed tomography (PPC-SRµCT) to image late larval and juvenile zebrafish, obtaining high-quality 3D virtual histology datasets of the mineralized skeleton and surrounding soft tissues. To demonstrate this technique, we used virtual histological thin sections and 3D segmentation to qualitatively and quantitatively compare wild-type zebrafish and

Indexed as

IodineZebrafishAnimalsHumansRadiopharmaceuticalsSkeletonSynchrotronsX-Ray MicrotomographyIodineRadiopharmaceuticals3D segmentationinner eariodine stainingnkx3.2propagation phase-contrast synchrotron microtomographyvirtual histologyWeberian apparatuszebrafish mutant

Identifiers

PMID36950679
PMCPMC10025580
OpenAlexW4323317480

What OpenQuestion holds

Textfull text, public
LicenceCC BY
measurements read39
identifiers read1
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.