Evidence map›Paper›PMID 36949471›Full record

ArticleBMC biology2023

Isolation and characterisation of novel Methanocorpusculum species indicates the genus is ancestrally host-associated.

James G Volmer, Rochelle M Soo, Paul N Evans, Emily C Hoedt, Ana L Astorga Alsina, Benjamin J Woodcroft, Gene W Tyson, Philip Hugenholtz, Mark Morrison

Open access · goldFull text read
In one paragraph

Article in BMC biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
8.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 21 citations in OpenAlex.

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  8. Isolation of aFrontiers in microbiology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

James G VolmerFaculty of Medicine, University of Queensland Frazer Institute, Translational Research Institute, Woolloongabba, 4102, Australia.
Rochelle M SooSchool of Chemistry and Molecular Biosciences and Australian Centre for Ecogenomics, University of Queensland, Saint Lucia, 4072, Australia.
Paul N EvansSchool of Chemistry and Molecular Biosciences and Australian Centre for Ecogenomics, University of Queensland, Saint Lucia, 4072, Australia.
Emily C HoedtFaculty of Medicine, University of Queensland Frazer Institute, Translational Research Institute, Woolloongabba, 4102, Australia.
Ana L Astorga AlsinaFaculty of Medicine, University of Queensland Frazer Institute, Translational Research Institute, Woolloongabba, 4102, Australia.
Benjamin J WoodcroftCentre for Microbiome Research, School of Biomedical Sciences, Queensland University of Technology (QUT), Translational Research Institute, Woolloongabba, 4102, Australia.
Gene W TysonCentre for Microbiome Research, School of Biomedical Sciences, Queensland University of Technology (QUT), Translational Research Institute, Woolloongabba, 4102, Australia.
Philip HugenholtzSchool of Chemistry and Molecular Biosciences and Australian Centre for Ecogenomics, University of Queensland, Saint Lucia, 4072, Australia.
Mark MorrisonFaculty of Medicine, University of Queensland Frazer Institute, Translational Research Institute, Woolloongabba, 4102, Australia. m.morrison1@uq.edu.au.ORCID 0000-0001-9257-9133
Translational Research Institute · AUThe University of Queensland · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundWith an increasing interest in the manipulation of methane produced from livestock cultivation, the microbiome of Australian marsupials provides a unique ecological and evolutionary comparison with 'low-methane' emitters. Previously, marsupial species were shown to be enriched for novel lineages of Methanocorpusculum, as well as Methanobrevibacter, Methanosphaera, and Methanomassiliicoccales. Despite sporadic reports of Methanocorpusculum from stool samples of various animal species, there remains little information on the impacts of these methanogens on their hosts.

resultsHere, we characterise novel host-associated species of Methanocorpusculum, to explore unique host-specific genetic factors and their associated metabolic potential. We performed comparative analyses on 176 Methanocorpusculum genomes comprising 130 metagenome-assembled genomes (MAGs) recovered from 20 public animal metagenome datasets and 35 other publicly available Methanocorpusculum MAGs and isolate genomes of host-associated and environmental origin. Nine MAGs were also produced from faecal metagenomes of the common wombat (Vombatus ursinus) and mahogany glider (Petaurus gracilis), along with the cultivation of one axenic isolate from each respective animal; M. vombati (sp. nov.) and M. petauri (sp. nov.).

conclusionsThrough our analyses, we substantially expand the available genetic information for this genus by describing the phenotypic and genetic characteristics of 23 host-associated species of Methanocorpusculum. These lineages display differential enrichment of genes associated with methanogenesis, amino acid biosynthesis, transport system proteins, phosphonate metabolism, and carbohydrate-active enzymes. These results provide insights into the differential genetic and functional adaptations of these novel host-associated species of Methanocorpusculum and suggest that this genus is ancestrally host-associated.

Indexed as

MethaneMicrobiotaAnimalsAustraliaMetagenomeMethaneComparative genomicsMarsupialMetagenomicsMethanocorpusculumMethanogenic archaeaMicrobial cultivation

Identifiers

PMID36949471
PMCPMC10035134
OpenAlexW4353055785

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LicenceCC BY
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.