Evidence map›Paper›PMID 36948709›Full record

ArticleMethods in enzymology2023

Protein labeling and crosslinking by covalent aptamers.

Mary Cacace, Yaniv Tivon, Alexander Deiters

Open access · greenAbstract read
In one paragraph

Article in Methods in enzymology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
2.0field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 8 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Mary CacaceDepartment of Chemistry, University of Pittsburgh, Pittsburgh, PA, United States.
Yaniv TivonDepartment of Chemistry, University of Pittsburgh, Pittsburgh, PA, United States.
Alexander DeitersDepartment of Chemistry, University of Pittsburgh, Pittsburgh, PA, United States.
University of Pittsburgh · US

Funding

Protein Labeling and Crosslinking by Covalent AptamersR01GM145086 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI DEITERS, ALEXANDER · 2022 to 2025
$1.4M
NIGMS NIH HHS R01 GM145086
6 · The paper itself

Abstract

In this chapter, a new approach to the selective modification of native proteins is discussed, using electrophilic covalent aptamers. These biochemical tools are generated through the site-specific incorporation of a label-transferring or crosslinking electrophile into a DNA aptamer. Covalent aptamers provide the ability to transfer a variety of functional handles to a protein of interest or to irreversibly crosslink to the target. Methods for the aptamer-mediated labeling and crosslinking of thrombin are described. Thrombin labeling is fast and selective, in both simple buffer and in human plasma and outcompetes nuclease-mediated degradation. This approach provides facile, sensitive detection of labeled protein by western blot, SDS-PAGE, and mass spectrometry.

Indexed as

Aptamers, NucleotideThrombinHumansMass SpectrometryProteinsAptamers, NucleotideProteinsThrombinAptamerElectrophileNucleic acidProtein bioconjugationProtein labeling

Identifiers

PMID36948709
PMCPMC10725707
OpenAlexW4312612781

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.