Evidence map›Paper›PMID 36945419›Full record

ArticleResearch square2023

PAM-Flexible Genome Editing with an Engineered Chimeric Cas9.

Sabrina Koseki, Lauren Hong, Vivian Yudistyra, Teodora Stan, Emma Tysinger, Rachel Silverstein, Christian Kramme, Nadia Amrani, Natasha Savic, Martin Pacesa and 9 more

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In one paragraph

Article in Research square, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors.

Sabrina KosekiDuke University.
Lauren HongDuke University.ORCID 0000-0002-1675-4806
Vivian YudistyraDuke University.ORCID 0000-0001-8583-9232
Teodora StanDuke University.
Emma TysingerMIT Media Lab.ORCID 0000-0002-3958-8097
Rachel SilversteinMassachusetts General Hospital.
Christian KrammeHarvard Medical School.
Nadia AmraniRNA Therapeutics Institute, University of Massachusetts Medical Schoo.
Natasha SavicMcMaster University.
Martin PacesaEPFL.ORCID 0000-0003-1560-5769
Tomás RodriguezUMass Medical School.ORCID 0000-0002-8724-5427
Manvitha PonnapatiMIT Media Lab.
Joseph JacobsonMassachusetts Institute of Technology.
George ChurchHarvard Medical School.
Ray TruantMcMaster University.ORCID 0000-0003-2542-6641
Martin JinekUniversity of Zurich.ORCID 0000-0002-7601-210X
Benjamin KleinstiverMassachusetts General Hospital and Harvard Medical School.ORCID 0000-0002-5469-0655
Erik SontheimerUniversity of Massachusetts Medical School.ORCID 0000-0002-0881-0310
Pranam ChatterjeeDuke University.ORCID 0000-0003-3957-8478

Funding

PROJECT 4: Somatic evolution of the hematopoietic system in cardiovascular diseaseP01HL142494 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI Filip K Swirski · 2019 to 2026
$19.5M
Scalable Development of Custom Genome Editing TechnologiesDP2CA281401 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI KLEINSTIVER, BENJAMIN PETER · 2022 to 2025
$2.5M
Engineered Cas9 Nucleases with Single-Genomic-Site Precision for CYBB CorrectionR01GM115911 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SONTHEIMER, ERIK J., WOLFE, SCOT A · 2016 to 2019
$1.6M
NCI NIH HHS DP2 CA281401NHLBI NIH HHS P01 HL142494NIGMS NIH HHS R01 GM115911
6 · The paper itself

Abstract

CRISPR enzymes require a defined protospacer adjacent motif (PAM) flanking a guide RNA-programmed target site, limiting their sequence accessibility for robust genome editing applications. In this study, we recombine the PAM-interacting domain of SpRY, a broad-targeting Cas9 possessing an NRN > NYN PAM preference, with the N-terminus of Sc++, a Cas9 with simultaneously broad, efficient, and accurate NNG editing capabilities, to generate a chimeric enzyme with highly flexible PAM preference: SpRYc. We demonstrate that SpRYc leverages properties of both enzymes to specifically edit diverse NNN PAMs and disease-related loci for potential therapeutic applications. In total, the unique approaches to generate SpRYc, coupled with its robust flexibility, highlight the power of integrative protein design for Cas9 engineering and motivate downstream editing applications that require precise genomic positioning.

Identifiers

PMID36945419
PMCPMC10029082

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.