Evidence map›Paper›PMID 36945379›Full record

ArticlebioRxiv : the preprint server for biology2023

Chromosomal organization of biosynthetic gene clusters suggests plasticity of myxobacterial specialized metabolism including descriptions for nine novel species:

Andrew Ahearne, Kayleigh Phillips, Thomas Knehans, Miranda Hoing, Scot E Dowd, D Cole Stevens

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In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Andrew AhearneDepartment of BioMolecular Sciences, School of Pharmacy, University of Mississippi, Oxford, MS 38677, USA.
Kayleigh PhillipsDepartment of BioMolecular Sciences, School of Pharmacy, University of Mississippi, Oxford, MS 38677, USA.
Thomas KnehansDepartment of BioMolecular Sciences, School of Pharmacy, University of Mississippi, Oxford, MS 38677, USA.
Miranda HoingDepartment of BioMolecular Sciences, School of Pharmacy, University of Mississippi, Oxford, MS 38677, USA.
Scot E DowdMR DNA, Molecular Research LP, Shallowater, TX 79363, USA.
D Cole StevensDepartment of BioMolecular Sciences, School of Pharmacy, University of Mississippi, Oxford, MS 38677, USA.

Funding

Tracking Glycosylation State with Fluorinated Glycosides ProbesP20GM130460 · NIGMS · UNIVERSITY OF MISSISSIPPI · PI Joshua S Sharp · 2020 to 2026
$17.9M
Myxobacterial predatory antimicrobial production in response to quorum sensing signal interceptionR15AI137996 · NIAID · UNIVERSITY OF MISSISSIPPI · PI STEVENS, DAVID COLE · 2019 to 2019
$422k
NIAID NIH HHS R15 AI137996NIGMS NIH HHS P20 GM130460
6 · The paper itself

Abstract

Natural products discovered from bacteria provide critically needed therapeutic leads for drug discovery, and myxobacteria are an established source for metabolites with unique chemical scaffolds and biological activities. Myxobacterial genomes accommodate an exceptional number and variety of biosynthetic gene clusters (BGCs) which encode for features involved in specialized metabolism. Continued discovery and sequencing of novel myxobacteria from the environment provides BGCs for the genome mining pipeline. Herein, we describe the collection, sequencing, and genome mining of 20 myxobacteria isolated from rhizospheric soil samples collected in North America. Nine isolates where determined to be novel species of myxobacteria including representatives from the genera

Indexed as

biosynthetic gene clustersgenome miningmyxobacteriaNannocystisspecialized metabolism

Identifiers

PMID36945379
PMCPMC10028903

What OpenQuestion holds

Textfull text, public
LicenceCC BY
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measurements read84
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.