Evidence map›Paper›PMID 36945124›Full record

ArticleInternational journal of STD & AIDS2023

Next generation sequencing to examine associations between vaginal washing and vaginal microbiota: A cohort study.

Michelle C Sabo, Jennifer E Balkus, Barbra A Richardson, Sujatha Srinivasan, Joshua Kimani, Omu Anzala, Jane Schwebke, Tina L Fiedler, David N Fredricks, R Scott McClelland

Abstract read
In one paragraph

Article in International journal of STD & AIDS, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Michelle C SaboDepartment of Medicine, University of Washington, Seattle, WA, United States.ORCID 0000-0002-5058-3166
Jennifer E BalkusDepartment of Global Health, University of Washington, Seattle, WA, United States.
Barbra A RichardsonDepartment of Global Health, University of Washington, Seattle, WA, United States.
Sujatha SrinivasanVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, United States.
Joshua KimaniInstitute for Tropical and Infectious Diseases, University of Nairobi, Nairobi, Kenya.
Omu AnzalaDepartment of Medical Microbiology, University of Nairobi, Nairobi, Kenya.
Jane SchwebkeDivision of Infectious Diseases, University of Alabama at Birmingham, Birmingham, AL, United States.
Tina L FiedlerVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, United States.
David N FredricksDepartment of Medicine, University of Washington, Seattle, WA, United States.
R Scott McClellandDepartment of Medicine, University of Washington, Seattle, WA, United States.ORCID 0000-0003-2574-4201

Funding

University of Washington/Fred Hutch Center for AIDS ResearchP30AI027757 · NIAID · UNIVERSITY OF WASHINGTON · PI EDWIN ROBERTO ORELLANA · 1988 to 2026
$104.9M
Impact of suppressive antimicrobial therapy on the vaginal microbiota and BVR01AI099106 · NIAID · UNIVERSITY OF WASHINGTON · PI MCCLELLAND, RAYMOND SCOTT · 2012 to 2014
$1.8M
The impact of vaginal microbiota on cervical dendritic cells: an observational study of women from sub-Saharan Africa at high risk for HIV acquisition.K23HD100221 · NICHD · UNIVERSITY OF WASHINGTON · PI SABO, MICHELLE CATHERINE · 2020 to 2024
$804k
NIAID NIH HHS HHSN266200400027CNIAID NIH HHS P30 AI027757NIAID NIH HHS R01 AI099106NICHD NIH HHS K23 HD100221
6 · The paper itself

Abstract

backgroundThe association between vaginal washing and HIV risk may be mediated by vaginal washing-associated changes in vaginal microbiota.

methodsData from a cohort of HIV-negative US and Kenyan women enrolled in the Preventing Vaginal Infections trial were analyzed. Vaginal fluid samples and vaginal washing data were collected every 2 months for 12 months. Bacterial relative abundances were measured by broad-range 16S rRNA gene polymerase chain reaction with next generation sequencing. Generalized estimating equations were used to evaluate the association between vaginal washing and i) the Shannon Diversity Index (SDI); and ii) mean change in percent bacterial relative abundances, with application of a 10% false discovery rate (FDR).

resultsParticipants (

conclusionsThe discordant results in Kenyan versus US women suggests the link between vaginal washing and sub-optimal vaginal microbiota may be context specific. Vaginal microbial shifts may not fully explain the association between vaginal washing and HIV acquisition.

Indexed as

HIV InfectionsMicrobiotaBacteriaCohort StudiesFemaleHigh-Throughput Nucleotide SequencingHumansKenyaRNA, Ribosomal, 16SVaginaRNA, Ribosomal, 16SAfricasexual behavioursex workerswomen

Identifiers

PMID36945124
PMCPMC11075686

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.