Evidence map›Paper›PMID 36944971›Full record

ArticleBMC genomics2023

Longitudinal multi-omic changes in the transcriptome and proteome of peripheral blood cells after a 4 Gy total body radiation dose to Rhesus macaques.

Shanaz A Ghandhi, Shad R Morton, Igor Shuryak, Younghyun Lee, Rajesh K Soni, Jay R Perrier, James Bakke, Janet Gahagan, Kim Bujold, Simon Authier and 5 more

Open access · goldFull text read
In one paragraph

Article in BMC genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

Shanaz A GhandhiCenter for Radiological Research, Columbia University Irving Medical Center, 630, W 168th street, VC11-237, New York, NY, 10032, USA. sg2423@cumc.columbia.edu.ORCID http://orcid.org/0000-0003-4199-0154
Shad R MortonCenter for Radiological Research, Columbia University Irving Medical Center, 630, W 168th street, VC11-237, New York, NY, 10032, USA.
Igor ShuryakCenter for Radiological Research, Columbia University Irving Medical Center, 630, W 168th street, VC11-237, New York, NY, 10032, USA.
Younghyun LeeCenter for Radiological Research, Columbia University Irving Medical Center, 630, W 168th street, VC11-237, New York, NY, 10032, USA.
Rajesh K SoniProteomics and Macromolecular Crystallography Shared Resource, Herbert Irving Comprehensive Cancer Center, NY, New York, 10032, USA.
Jay R PerrierCenter for Radiological Research, Columbia University Irving Medical Center, 630, W 168th street, VC11-237, New York, NY, 10032, USA.
James BakkeBiosciences Division, SRI, 333 Ravenswood Avenue, Menlo Park, CA, 94025, USA.
Janet GahaganBiosciences Division, SRI, 333 Ravenswood Avenue, Menlo Park, CA, 94025, USA.
Kim BujoldCharles River Laboratory, 445 Armand-Grappier Blvd, (QC) H7V 4B3, Laval, Canada.
Simon AuthierCharles River Laboratory, 445 Armand-Grappier Blvd, (QC) H7V 4B3, Laval, Canada.
Sally A AmundsonCenter for Radiological Research, Columbia University Irving Medical Center, 630, W 168th street, VC11-237, New York, NY, 10032, USA.
David J BrennerCenter for Radiological Research, Columbia University Irving Medical Center, 630, W 168th street, VC11-237, New York, NY, 10032, USA.
Denise NishitaBiosciences Division, SRI, 333 Ravenswood Avenue, Menlo Park, CA, 94025, USA.
Polly ChangBiosciences Division, SRI, 333 Ravenswood Avenue, Menlo Park, CA, 94025, USA.
Helen C TurnerCenter for Radiological Research, Columbia University Irving Medical Center, 630, W 168th street, VC11-237, New York, NY, 10032, USA.
Columbia University Irving Medical Center · USSRI International · USHerbert Irving Comprehensive Cancer Center

Funding

Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Anil K Rustgi · 1985 to 2026
$115.3M
Sample Engineering CoreU19AI067773 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI AMUNDSON, SALLY A. · 2005 to 2024
$105.4M
NCI NIH HHS P30 CA013696NIAID NIH HHS HHSN272201500013INIAID NIH HHS U19 AI067773NIH HHS 2P30 CA013696-45
6 · The paper itself

Abstract

backgroundNon-human primates, such as Rhesus macaques, are a powerful model for studies of the cellular and physiological effects of radiation, development of radiation biodosimetry, and for understanding the impact of radiation on human health. Here, we study the effects of 4 Gy total body irradiation (TBI) at the molecular level out to 28 days and at the cytogenetic level out to 56 days after exposure. We combine the global transcriptomic and proteomic responses in peripheral whole blood to assess the impact of acute TBI exposure at extended times post irradiation.

resultsThe overall mRNA response in the first week reflects a strong inflammatory reaction, infection response with neutrophil and platelet activation. At 1 week, cell cycle arrest and re-entry processes were enriched among mRNA changes, oncogene-induced senescence and MAPK signaling among the proteome changes. Influenza life cycle and infection pathways initiated earlier in mRNA and are reflected among the proteomic changes during the first week. Transcription factor proteins SRC, TGFβ and NFATC2 were immediately induced at 1 day after irradiation with increased transcriptional activity as predicted by mRNA changes persisting up to 1 week. Cell counts revealed a mild / moderate hematopoietic acute radiation syndrome (H-ARS) reaction to irradiation with expected lymphopenia, neutropenia and thrombocytopenia that resolved within 30 days. Measurements of micronuclei per binucleated cell levels in cytokinesis-blocked T-lymphocytes remained high in the range 0.27-0.33 up to 28 days and declined to 0.1 by day 56.

conclusionsOverall, we show that the TBI 4 Gy dose in NHPs induces many cellular changes that persist up to 1 month after exposure, consistent with damage, death, and repopulation of blood cells.

Indexed as

TranscriptomeWhole-Body IrradiationAnimalsBlood CellsMacaca mulattaMultiomicsProteomeProteomicsRadiation DosageProteomeBiofluidBloodCytogeneticsHematological acute radiation syndromeHematologyNon-human primatesProteomicsRadiationRadiation dosimetryTranscriptomics

Identifiers

PMID36944971
PMCPMC10031949
OpenAlexW4328130276

What OpenQuestion holds

Textfull text, public
LicenceCC BY
reference markers read3
measurements read61
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.