Evidence map›Paper›PMID 36943880›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2023

The capsid lattice engages a bipartite NUP153 motif to mediate nuclear entry of HIV-1 cores.

Qi Shen, Sushila Kumari, Chaoyi Xu, Sooin Jang, Jiong Shi, Ryan C Burdick, Lev Levintov, Qiancheng Xiong, Chunxiang Wu, Swapnil C Devarkar and 13 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 43 citations in OpenAlex.

  1. Mechanistic Insights into HIV-1 Capsid Interactions with CPSF6.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Article
  4. HIV-1 capsid interactions with Nuclear Pore Complex components support nuclear entry via affinity gradient.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Mechanistic insights into lenacapavir-induced off-pathway HIV-1 capsid assembly.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  10. Article
  11. Article
  12. Article
  13. ThebioRxiv : the preprint server for biology · 2025
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Lenacapavir disrupts HIV-1 core integrity while stabilizing the capsid lattice.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 5 institutions in 1 country.

Qi ShenDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511.ORCID 0000-0002-9062-8955
Sushila KumariHIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute at Frederick, Frederick, MD 21702.ORCID 0000-0003-0827-7517
Chaoyi XuDepartment of Chemistry and Biochemistry, University of Delaware, Newark, DE 19716.
Sooin JangDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA 02215.
Jiong ShiDepartment of Pathology, Microbiology and Immunology, Vanderbilt University Medical Center, Nashville, TN 37232.
Ryan C BurdickHIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute at Frederick, Frederick, MD 21702.
Lev LevintovDepartment of Chemistry and Biochemistry, University of Delaware, Newark, DE 19716.
Qiancheng XiongDepartment of Cell Biology, Yale School of Medicine, New Haven, CT 06520.ORCID 0000-0002-9897-7391
Chunxiang WuDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511.ORCID 0000-0002-8635-1578
Swapnil C DevarkarDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511.
Taoran TianNanobiology Institute, Yale University, West Haven, CT 06516.
Therese N TriplerDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511.
Yingxia HuDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511.
Shuai YuanDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511.
Joshua TempleDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511.ORCID 0000-0002-1351-5690
Qingzhou FengDepartment of Cell Biology, Yale School of Medicine, New Haven, CT 06520.
C Patrick LuskDepartment of Cell Biology, Yale School of Medicine, New Haven, CT 06520.ORCID 0000-0003-4703-0533
Christopher AikenDepartment of Pathology, Microbiology and Immunology, Vanderbilt University Medical Center, Nashville, TN 37232.ORCID 0000-0002-2476-4078
Alan N EngelmanDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA 02215.ORCID 0000-0002-9709-2591
Juan R PerillaDepartment of Chemistry and Biochemistry, University of Delaware, Newark, DE 19716.ORCID 0000-0003-1171-6816
Vinay K PathakHIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute at Frederick, Frederick, MD 21702.ORCID 0000-0003-2441-8412
Chenxiang LinDepartment of Cell Biology, Yale School of Medicine, New Haven, CT 06520.ORCID 0000-0001-7041-1946
Yong XiongDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511.ORCID 0000-0001-9625-9313
Yale University · USNational Cancer Institute · USUniversity of Delaware · USHarvard University · USVanderbilt University Medical Center · US

Funding

Project 3. IntegrationU54AI170791 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Peijun Zhang · 2022 to 2026
$30.6M
Technology Development 2: MAS NMR and dynamic nuclear polarization for HIV-1 structural biologyP50AI150481 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GRONENBORN, ANGELA M. · 2019 to 2021
$14.1M
Viral Replication and Interactions with Host FactorsZIABC011436 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI PATHAK, VINAY K. · 2012 to 2025
$12.2M
Nuclear Localization of HIV-1 Preintegration ComplexesR01AI052014 · NIAID · DANA-FARBER CANCER INSTITUTE · PI ENGELMAN, ALAN N. · 2003 to 2025
$11.4M
PREDOCTORAL PROGRAM IN BIOPHYSICST32GM008283 · NIGMS · YALE UNIVERSITY · PI XIONG, YONG · 1988 to 2022
$10.5M
Pilot Research Subproject ProgramP30GM110758 · NIGMS · UNIVERSITY OF DELAWARE · PI BEEBE, THOMAS PAUL · 2014 to 2018
$5.8M
The mechanism of ESCRT-mediated surveillance of the nuclear envelope barrierR01GM105672 · NIGMS · YALE UNIVERSITY · PI LUSK, CHARLES PATRICK · 2013 to 2025
$4.6M
A multiscale approach for elucidating nuclear entry mechanisms of HIV-1 capsidR01AI162260 · NIAID · YALE UNIVERSITY · PI LIN, CHENXIANG, XIONG, YONG · 2021 to 2025
$3.5M
Breakthrough Molecular Dynamics Research via an Anton2 SupercomputerR01GM116961 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI BLOOD, PHILIP D. · 2016 to 2023
$3.0M
Generating nuclear pore complex mimics with DNA origamiR21GM109466 · NIGMS · YALE UNIVERSITY · PI LIN, CHENXIANG, LUSK, CHARLES PATRICK · 2014 to 2015
$458k
NIAID NIH HHS P50 AI150481NIAID NIH HHS R01 AI052014NIAID NIH HHS R01 AI162260NIAID NIH HHS U54 AI170791NIGMS NIH HHS P30 GM110758NIGMS NIH HHS R01 GM105672NIGMS NIH HHS R01 GM116961NIGMS NIH HHS R21 GM109466NIGMS NIH HHS T32 GM008283NIH HHS P30GM110758NIH HHS R01AI162260NIH HHS R01GM105672NIH HHS R21GM109466
6 · The paper itself

Abstract

Increasing evidence has suggested that the HIV-1 capsid enters the nucleus in a largely assembled, intact form. However, not much is known about how the cone-shaped capsid interacts with the nucleoporins (NUPs) in the nuclear pore for crossing the nuclear pore complex. Here, we elucidate how NUP153 binds HIV-1 capsid by engaging the assembled capsid protein (CA) lattice. A bipartite motif containing both canonical and noncanonical interaction modules was identified at the C-terminal tail region of NUP153. The canonical cargo-targeting phenylalanine-glycine (FG) motif engaged the CA hexamer. By contrast, a previously unidentified triple-arginine (RRR) motif in NUP153 targeted HIV-1 capsid at the CA tri-hexamer interface in the capsid. HIV-1 infection studies indicated that both FG- and RRR-motifs were important for the nuclear import of HIV-1 cores. Moreover, the presence of NUP153 stabilized tubular CA assemblies in vitro. Our results provide molecular-level mechanistic evidence that NUP153 contributes to the entry of the intact capsid into the nucleus.

Indexed as

HIV-1HIV InfectionsHIV SeropositivityActive Transport, Cell NucleusCapsidCapsid ProteinsHumansNuclear PoreNuclear Pore Complex ProteinsCapsid ProteinsNuclear Pore Complex ProteinsNUP153 protein, humanHIV-1 capsidlattice stabilizationnuclear entryNUP153RRR-motif

Identifiers

PMID36943880
PMCPMC10068764
OpenAlexW4328048812

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.