Evidence map›Paper›PMID 36943294›Full record

ArticlePlant physiology2023

The microRNA ppe-miR393 mediates auxin-induced peach fruit softening by promoting ethylene production.

Li Ma, Yingjie Zhao, Miaojin Chen, Yichen Li, Zhijun Shen, Yang Cao, Di Wu, Mingliang Yu, Donald Grierson, Yanna Shi and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
13.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
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  10. Focus on fruit crops.Plant physiology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Li MaCollege of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China.ORCID 0009-0003-6404-5021
Yingjie ZhaoCollege of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China.ORCID 0009-0004-5048-5269
Miaojin ChenNingbo Fenghua District Peach Research Institute, Ningbo 315502, China.
Yichen LiCollege of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China.ORCID 0009-0006-9281-7887
Zhijun ShenJiangsu Key Laboratory for Horticultural Crop Genetic Improvement, Institute of Pomology, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China.
Yang CaoCollege of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China.
Di WuCollege of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China.ORCID 0000-0002-4997-5082
Mingliang YuJiangsu Key Laboratory for Horticultural Crop Genetic Improvement, Institute of Pomology, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China.
Donald GriersonState Agriculture Ministry Laboratory of Horticultural Plant Growth, Development and Quality Improvement, Zhejiang University, Zijingang Campus, Hangzhou 310058, China.ORCID 0000-0002-2238-8072
Yanna ShiCollege of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China.ORCID 0000-0001-8963-8569
Kunsong ChenCollege of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China.ORCID 0000-0003-2874-2383
Zhejiang University · CNJiangsu Academy of Agricultural Sciences · CNUniversity of Nottingham · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Auxin can inhibit or promote fruit ripening, depending on the species. Melting flesh (MF) peach fruit (Prunus persica L. Batsch) cultivars produce high levels of ethylene caused by high concentrations of indole-3-acetic acid (IAA), which leads to rapid fruit softening at the late stage of development. In contrast, due to the low concentrations of IAA, the fruit of stony hard (SH) peach cultivars does not soften and produces little ethylene. Auxin seems necessary to trigger the biosynthesis of ethylene in peach fruit; however, the mechanism is not well understood. In this study, we identified miRNA gene family members ppe-miR393a and ppe-miR393b that are differentially expressed in SH and MF fruits. RNA ligase-mediated 5' rapid amplification of cDNA ends and transient transformation of Nicotiana benthamiana revealed TRANSPORT INHIBITOR RESPONSE 1 (PpTIR1), part of the auxin perception and response system, as a target of ppe-miR393a and b. Yeast 2-hybrid assay and bimolecular fluorescence complementation assay revealed that PpTIR1 physically interacts with an Aux/IAA protein PpIAA13. The results of yeast 1-hybrid assay, electrophoretic mobility shift assay, and dual-luciferase assay indicated that PpIAA13 could directly bind to and trans-activate the promoter of 1-aminocyclopropane-1-carboxylic acid synthase 1 (PpACS1), required for ethylene biosynthesis. Transient overexpression and suppression of ppe-miR393a and PpIAA13 in peach fruit induced and repressed the expression of PpACS1, confirming their regulatory role in ethylene synthesis. Gene expression analysis in developing MF and SH fruits, combined with postharvest α-naphthalene acetic acid (NAA) treatment, supports a role for a ppe-miR393-PpTIR1-PpIAA13-PpACS1 module in regulating auxin-related differences in ethylene production and softening extent in different types of peach.

Indexed as

Prunus persicaEthylenesFruitGene Expression Regulation, PlantIndoleacetic AcidsSaccharomyces cerevisiaeethyleneEthylenesIndoleacetic Acids

Identifiers

PMID36943294
PMCPMC10231374
OpenAlexW4328047944

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.