Evidence map›Paper›PMID 36943234›Full record

ArticleThe Journal of experimental medicine2023

Human PIK3R1 mutations disrupt lymphocyte differentiation to cause activated PI3Kδ syndrome 2.

Tina Nguyen, Anthony Lau, Julia Bier, Kristen C Cooke, Helen Lenthall, Stephanie Ruiz-Diaz, Danielle T Avery, Henry Brigden, David Zahra, William A Sewell and 19 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
  2. Article
  3. T follicular helper cells in primary immune regulatory disorders.The Journal of allergy and clinical immunology · 2025
    Review
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  13. Single-nuclei transcriptome analysis of IgMFrontiers in immunology · 2025
    Article
  14. Review
  15. Article
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  18. TThe Journal of allergy and clinical immunology · 2024
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 12 institutions in 6 countries.

Tina Nguyen *Garvan Institute of Medical Research , Darlinghurst, Australia.ORCID 0000-0003-0709-3636
Anthony Lau *Garvan Institute of Medical Research , Darlinghurst, Australia.ORCID 0000-0002-7338-7176
Julia Bier *Garvan Institute of Medical Research , Darlinghurst, Australia.ORCID 0000-0001-7727-1149
Kristen C CookeCharles Perkins Centre, School of Life and Environmental Sciences, University of Sydney , Sydney, Australia.ORCID 0000-0002-3534-1660
Helen LenthallGarvan Institute of Medical Research , Darlinghurst, Australia.ORCID 0000-0002-5250-4935
Stephanie Ruiz-DiazGarvan Institute of Medical Research , Darlinghurst, Australia.ORCID 0000-0003-4871-5980
Danielle T AveryGarvan Institute of Medical Research , Darlinghurst, Australia.ORCID 0000-0002-9156-0489
Henry BrigdenGarvan Institute of Medical Research , Darlinghurst, Australia.ORCID 0000-0002-4205-3093
David ZahraGarvan Institute of Medical Research , Darlinghurst, Australia.ORCID 0000-0002-4433-2766
William A SewellGarvan Institute of Medical Research , Darlinghurst, Australia.ORCID 0000-0002-3586-8761
Luke DroneyDepartment of Clinical Immunology, Royal Brisbane and Women's Hospital , Brisbane, Australia.ORCID 0000-0002-2126-8327
Satoshi OkadaDepartment of Pediatrics, Graduate School of Biomedical and Health Sciences, Hiroshima University , Hiroshima, Japan.ORCID 0000-0002-4622-5657
Takaki AsanoDepartment of Pediatrics, Graduate School of Biomedical and Health Sciences, Hiroshima University , Hiroshima, Japan.ORCID 0000-0003-1424-2433
Hassan AbolhassaniDepartment of Biosciences and Nutrition, Division of Clinical Immunology, Karolinska University Hospital Huddinge, Karolinska Institutet , Stockholm, Sweden.ORCID 0000-0002-4838-0407
Zahra ChavoshzadehPediatric Infections Research Center, Mofid Children's Hospital, Shahid Beheshti University of Medical Sciences , Tehran, Iran.ORCID 0000-0003-1869-8630
Roshini S AbrahamDepartment of Pathology and Laboratory Medicine, Nationwide Children's Hospital , Columbus, OH, USA.ORCID 0000-0001-8109-8502
Nipunie RajapakseDepartment of Pediatric and Adolescent Medicine, Division of Pediatric Infectious Diseases, Mayo Clinic , Rochester, MN, USA.ORCID 0000-0001-9286-2473
Eric W KleeCenter for Individualized Medicine, Mayo Clinic , Rochester, MN, USA.ORCID 0000-0003-2946-5795
Joseph A ChurchDivision of Clinical Immunology and Allergy, Children's Hospital of Los Angeles , Los Angeles, CA, USA.
Andrew WilliamsClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0000-0001-7227-8691
Melanie WongClinical Immunogenomics Research Consortium Australasia , Sydney, Australia.ORCID 0000-0002-5984-043X
Christoph BurkhartNovartis Institutes for Biomedical Research, Novartis Pharma AG , Basel, Switzerland.ORCID 0000-0002-9014-4360
Gulbu UzelLaboratory of Clinical Immunology and Microbiology, National Institutes of Allergy and Infectious Diseases, National Institutes of Health , Bethesda, MD, USA.ORCID 0000-0002-3942-1086
David R CroucherGarvan Institute of Medical Research , Darlinghurst, Australia.ORCID 0000-0003-4965-8674
David E JamesCharles Perkins Centre, School of Life and Environmental Sciences, University of Sydney , Sydney, Australia.ORCID 0000-0001-5946-5257
Cindy S MaGarvan Institute of Medical Research , Darlinghurst, Australia.ORCID 0000-0001-5387-8413
Robert BrinkGarvan Institute of Medical Research , Darlinghurst, Australia.ORCID 0000-0002-9586-3655
Stuart G TangyeGarvan Institute of Medical Research , Darlinghurst, Australia.ORCID 0000-0002-5360-5180
Elissa K DeenickGarvan Institute of Medical Research , Darlinghurst, Australia.ORCID 0000-0002-9271-0004
Garvan Institute of Medical Research · AUThe University of Sydney · AUHiroshima University · JPKarolinska University Hospital · SEMayo Clinic · USMayo Clinic in Florida · USNational Institutes of Health · USNationwide Children's Hospital · USNovartis (Switzerland) · CHRoyal Brisbane and Women's Hospital · AUShahid Beheshti University of Medical Sciences · IRUniversity of Southern California · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Heterozygous loss-of-function (LOF) mutations in PIK3R1 (encoding phosphatidylinositol 3-kinase [PI3K] regulatory subunits) cause activated PI3Kδ syndrome 2 (APDS2), which has a similar clinical profile to APDS1, caused by heterozygous gain-of-function (GOF) mutations in PIK3CD (encoding the PI3K p110δ catalytic subunit). While several studies have established how PIK3CD GOF leads to immune dysregulation, less is known about how PIK3R1 LOF mutations alter cellular function. By studying a novel CRISPR/Cas9 mouse model and patients' immune cells, we determined how PIK3R1 LOF alters cellular function. We observed some overlap in cellular defects in APDS1 and APDS2, including decreased intrinsic B cell class switching and defective Tfh cell function. However, we also identified unique APDS2 phenotypes including defective expansion and affinity maturation of Pik3r1 LOF B cells following immunization, and decreased survival of Pik3r1 LOF pups. Further, we observed clear differences in the way Pik3r1 LOF and Pik3cd GOF altered signaling. Together these results demonstrate crucial differences between these two genetic etiologies.

Indexed as

Immunologic Deficiency SyndromesPhosphatidylinositol 3-KinasesAnimalsB-LymphocytesCell DifferentiationClass Ia Phosphatidylinositol 3-KinaseClass I Phosphatidylinositol 3-KinasesHumansMiceMutationSyndromeClass Ia Phosphatidylinositol 3-KinaseClass I Phosphatidylinositol 3-KinasesPhosphatidylinositol 3-KinasesPIK3R1 protein, human

Identifiers

PMID36943234
PMCPMC10037341
OpenAlexW4328048430

What OpenQuestion holds

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LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.