Evidence map›Paper›PMID 36942851›Full record

ArticleeLife2023

Identification of a conserved S2 epitope present on spike proteins from all highly pathogenic coronaviruses.

Rui P Silva, Yimin Huang, Annalee W Nguyen, Ching-Lin Hsieh, Oladimeji S Olaluwoye, Tamer S Kaoud, Rebecca E Wilen, Ahlam N Qerqez, Jun-Gyu Park, Ahmed M Khalil and 16 more

Open access · goldFull text read
In one paragraph

Article in eLife, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
12.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 84 citations in OpenAlex.

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  15. Molecular mechanisms of SARS-CoV-2 entry: implications for biomedical strategies.Microbiology and molecular biology reviews : MMBR · 2025
    Review
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12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 5 institutions in 2 countries.

Rui P Silva *Department of Molecular Biosciences, The University of Texas at Austin, Austin, United States.
Yimin Huang *Department of Molecular Biosciences, The University of Texas at Austin, Austin, United States.ORCID https://orcid.org/0000-0003-4348-5688
Annalee W Nguyen *Department of Chemical Engineering, The University of Texas at Austin, Austin, United States.ORCID https://orcid.org/0000-0003-1268-7164
Ching-Lin HsiehDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, United States.
Oladimeji S OlaluwoyeDepartment of Chemistry and Biochemistry, The University of Texas at Dallas, Dallas, United States.ORCID https://orcid.org/0000-0002-7888-0672
Tamer S KaoudDivision of Chemical Biology and Medicinal Chemistry, The University of Texas at Austin, Austin, United States.ORCID https://orcid.org/0000-0003-1298-8725
Rebecca E WilenDepartment of Chemical Engineering, The University of Texas at Austin, Austin, United States.
Ahlam N QerqezDepartment of Chemical Engineering, The University of Texas at Austin, Austin, United States.
Jun-Gyu ParkTexas Biomedical Research Institute, San Antonio, United States.
Ahmed M KhalilTexas Biomedical Research Institute, San Antonio, United States.
Laura R AzouzDepartment of Chemical Engineering, The University of Texas at Austin, Austin, United States.
Kevin C LeDepartment of Chemical Engineering, The University of Texas at Austin, Austin, United States.ORCID https://orcid.org/0000-0001-5098-7737
Amanda L BohanonDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, United States.ORCID https://orcid.org/0000-0002-3371-3416
Andrea M DiVenereDepartment of Chemical Engineering, The University of Texas at Austin, Austin, United States.
Yutong LiuDepartment of Chemical Engineering, The University of Texas at Austin, Austin, United States.
Alison G LeeDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, United States.
Dzifa A AmengorDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, United States.
Sophie R ShoemakerDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.
Shawn M CostelloBiophysics Graduate Program, University of California, Berkeley, Berkeley, United States.
Eduardo A PadlanRetired, Kensington, United States.
Susan MarquseeDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.ORCID https://orcid.org/0000-0001-7648-2163
Luis Martinez-SobridoTexas Biomedical Research Institute, San Antonio, United States.
Kevin N DalbyDivision of Chemical Biology and Medicinal Chemistry, The University of Texas at Austin, Austin, United States.ORCID https://orcid.org/0000-0001-9272-5129
Sheena D'ArcyDepartment of Chemistry and Biochemistry, The University of Texas at Dallas, Dallas, United States.ORCID https://orcid.org/0000-0001-5055-988X
Jason S McLellanDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, United States.
Jennifer A MaynardDepartment of Chemical Engineering, The University of Texas at Austin, Austin, United States.ORCID https://orcid.org/0000-0002-0363-8486
The University of Texas at Austin · USUniversity of California, Berkeley · USTexas Biomedical Research Institute · USThe University of Texas at Dallas · USChonnam National University · KR

Funding

Sequence and Environmental Determinants of the Protein Energy LandscapeR01GM050945 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI MARQUSEE, SUSAN · 1999 to 2022
$7.4M
Structure, Function and Antigenicity of Coronavirus Spike ProteinsR01AI127521 · NIAID · UNIVERSITY OF TEXAS AT AUSTIN · PI MCLELLAN, JASON SCOTT, WARD, ANDREW BARRETT · 2017 to 2021
$3.1M
The Role of Dynamics in Regulating Multi-Activity Protein Complexes and ChromatinR35GM133751 · NIGMS · UNIVERSITY OF TEXAS DALLAS · PI Sheena D'Arcy · 2019 to 2026
$2.9M
Systematic evaluation of B. pertussis ACT’s role as a protective antigenR01AI122753 · NIAID · UNIVERSITY OF TEXAS AT AUSTIN · PI MAYNARD, JENNIFER A · 2016 to 2020
$1.9M
Sequence and Environmental Determinants of the Protein Energy LandscapeR35GM149319 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI SUSAN MARQUSEE · 2023 to 2026
$1.7M
NIAID NIH HHS R01 AI122753NIAID NIH HHS R01 AI127521NIGMS NIH HHS R01 GM050945NIGMS NIH HHS R35 GM133751NIGMS NIH HHS R35 GM149319NIH HHS AI122753NIH HHS AI127521NIH HHS GM133751
6 · The paper itself

Abstract

To address the ongoing SARS-CoV-2 pandemic and prepare for future coronavirus outbreaks, understanding the protective potential of epitopes conserved across SARS-CoV-2 variants and coronavirus lineages is essential. We describe a highly conserved, conformational S2 domain epitope present only in the prefusion core of β-coronaviruses: SARS-CoV-2 S2 apex residues 980-1006 in the flexible hinge. Antibody RAY53 binds the native hinge in MERS-CoV and SARS-CoV-2 spikes on the surface of mammalian cells and mediates antibody-dependent cellular phagocytosis and cytotoxicity against SARS-CoV-2 spike in vitro. Hinge epitope mutations that ablate antibody binding compromise pseudovirus infectivity, but changes elsewhere that affect spike opening dynamics, including those found in Omicron BA.1, occlude the epitope and may evade pre-existing serum antibodies targeting the S2 core. This work defines a third class of S2 antibody while providing insights into the potency and limitations of S2 core epitope targeting.

Indexed as

COVID-19Spike Glycoprotein, CoronavirusAnimalsAntibodiesAntibodies, NeutralizingAntibodies, ViralEpitopesMammalsSARS-CoV-2AntibodiesAntibodies, NeutralizingAntibodies, ViralEpitopesSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2biochemistrychemical biologycoronavirusMERS-CoVS2 coreS2 hingeSARS-CoV-2spikeviruses

Identifiers

PMID36942851
PMCPMC10030117
OpenAlexW4327906127

What OpenQuestion holds

Textfull text, public
LicenceCC BY
measurements read126
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.