Evidence map›Paper›PMID 36942662›Full record

ArticleMicrobial biotechnology2023

Delineation of a lactococcal conjugation system reveals a restriction-modification evasion system.

Guillermo Ortiz Charneco, Philip Kelleher, Andrius Buivydas, Sofia Dashko, Paul P de Waal, Noël N M E van Peij, Richard J Roberts, Jennifer Mahony, Douwe van Sinderen

Open access · goldAbstract read
In one paragraph

Article in Microbial biotechnology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.1field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Guillermo Ortiz CharnecoSchool of Microbiology & APC Microbiome Ireland, University College Cork, Cork, Ireland.ORCID 0000-0003-1601-6173
Philip KelleherSchool of Microbiology & APC Microbiome Ireland, University College Cork, Cork, Ireland.
Andrius BuivydasSchool of Microbiology & APC Microbiome Ireland, University College Cork, Cork, Ireland.
Sofia DashkoDSM Food and Beverage, Center for Food Innovation, Delft, The Netherlands.
Paul P de WaalDSM Food and Beverage, Center for Food Innovation, Delft, The Netherlands.
Noël N M E van PeijDSM Food and Beverage, Center for Food Innovation, Delft, The Netherlands.
Richard J RobertsNew England Biolabs, Ipswich, Massachusetts, USA.
Jennifer MahonySchool of Microbiology & APC Microbiome Ireland, University College Cork, Cork, Ireland.ORCID 0000-0001-5846-6303
Douwe van SinderenSchool of Microbiology & APC Microbiome Ireland, University College Cork, Cork, Ireland.ORCID 0000-0003-1823-7957
University College Cork · IEDSM (Netherlands) · NLNew England Biolabs (United States) · US

Funding

Science Foundation Ireland 12/RC/2273-P1Science Foundation Ireland 12/RC/2273-P2Science Foundation Ireland 17/SP/4678
6 · The paper itself

Abstract

Plasmid pUC11B is a 49.3-kb plasmid harboured by the fermented meat isolate Lactococcus lactis subsp. lactis UC11. Among other features, pUC11B encodes a pMRC01-like conjugation system and tetracycline-resistance. In this study, we demonstrate that this plasmid can be conjugated at high frequencies to recipient strains. Mutational analysis of the 22 genes encompassing the presumed pUC11B conjugation cluster revealed the presence of several genes with essential conjugation functions, as well as a gene, trsR, encoding a putative transcriptional repressor of this conjugation cluster. Furthermore, plasmid pUC11B encodes an anti-restriction protein, TrsAR, which facilitates higher conjugation frequencies when pUC11B is transferred into recipient strains containing Type II or Type III RM systems. These findings demonstrate how RM mechanisms can be circumvented when they act as a biological barrier for conjugation events.

Indexed as

DNA Restriction-Modification EnzymesLactococcus lactisConjugation, GeneticPlasmidsDNA Restriction-Modification Enzymes

Identifiers

PMID36942662
PMCPMC10221548
OpenAlexW4328049501

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.