Evidence map›Paper›PMID 36942098›Full record

ArticleData in brief2023

Image dataset of urine test results on petri dishes for deep learning classification.

Gabriel Rodrigues da Silva, Igor Batista Rosmaninho, Eduardo Zancul, Vanessa Rita de Oliveira, Gabriela Rodrigues Francisco, Nathamy Fernanda Dos Santos, Karin de Mello Macêdo, Amauri José da Silva, Érika Knabben de Lima, Mara Elisa Borsato Lemo and 4 more

Open access · goldFull text read
In one paragraph

Article in Data in brief, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Deep Learning-Based Rapid Identification ofRisk management and healthcare policy · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Gabriel Rodrigues da SilvaUniversity of São Paulo, School of Engineering, Av. Prof. Luciano Gualberto, 1380, Cidade Universitária, São Paulo-SP, 05508-010, Brazil.
Igor Batista RosmaninhoUniversity of São Paulo, School of Engineering, Av. Prof. Luciano Gualberto, 1380, Cidade Universitária, São Paulo-SP, 05508-010, Brazil.
Eduardo ZanculUniversity of São Paulo, School of Engineering, Av. Prof. Luciano Gualberto, 1380, Cidade Universitária, São Paulo-SP, 05508-010, Brazil.
Vanessa Rita de OliveiraGrupo Fleury - Clinical Analysis, Av. Morumbi, 8860, São Paulo-SP, Brazil.
Gabriela Rodrigues FranciscoGrupo Fleury - Clinical Analysis, Av. Morumbi, 8860, São Paulo-SP, Brazil.
Nathamy Fernanda Dos SantosGrupo Fleury - Clinical Analysis, Av. Morumbi, 8860, São Paulo-SP, Brazil.
Karin de Mello MacêdoGrupo Fleury - Clinical Analysis, Av. Morumbi, 8860, São Paulo-SP, Brazil.
Amauri José da SilvaGrupo Fleury - Clinical Analysis, Av. Morumbi, 8860, São Paulo-SP, Brazil.
Érika Knabben de LimaGrupo Fleury - Clinical Analysis, Av. Morumbi, 8860, São Paulo-SP, Brazil.
Mara Elisa Borsato LemoGrupo Fleury - Clinical Analysis, Av. Morumbi, 8860, São Paulo-SP, Brazil.
Alessandra MaldonadoGrupo Fleury - Clinical Analysis, Av. Morumbi, 8860, São Paulo-SP, Brazil.
Maria Emilia G MouraGrupo Fleury - Clinical Analysis, Av. Morumbi, 8860, São Paulo-SP, Brazil.
Flávia Helena da SilvaGrupo Fleury - Clinical Analysis, Av. Morumbi, 8860, São Paulo-SP, Brazil.
Gustavo Stuani GuimarãesGrupo Fleury - Clinical Analysis, Av. Morumbi, 8860, São Paulo-SP, Brazil.
Fleury S.A. (Brazil) · BRUniversidade de São Paulo · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recent advancements in image analysis and interpretation technologies using computer vision techniques have shown potential for novel applications in clinical microbiology laboratories to support task automation aiming for faster and more reliable diagnostics. Deep learning models can be a valuable tool in the screening process, helping technicians spend less time classifying no-growth results and quickly separating the categories of tests that deserve further analysis. In this context, creating datasets with correctly classified images is fundamental for developing and improving such models. Therefore, a dataset of urine test Petri dishes images was collected following a standardized process, with controlled conditions of positioning and lighting. Image acquisition was conducted by applying a hardware chamber equipped with a led lightning source and a smartphone camera with 12 MP resolution. A software application was developed to support image classification and handling. Experienced microbiologists classified the images according to the positive, negative, and uncertain test results. The resulting dataset contains a total of 1500 images and can support the development of deep learning algorithms to classify urine exams according to their microbial growth.

Indexed as

Computational VisionImage ClassificationPetri DishUrine Test Classification

Identifiers

PMID36942098
PMCPMC10024077
OpenAlexW4322721463

What OpenQuestion holds

Textfull text, public
LicenceCC BY
measurements read3
identifiers read2
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.