Evidence map›Paper›PMID 36942068›Full record

ArticleIranian journal of pharmaceutical research : IJPR2022

Computational and Experimental Evaluation of Linker Peptides and Thioredoxin Fusion Tag in CD20-rituximab Specific Interactions.

Shadi Damough, Reyhaneh Alizadeh, Samira Komijani, Mahsa Shirin, Ahmad Adeli, Ladan Mafakher, Fereidoun Mahboudi, Yeganeh Talebkhan Garoosi

Open access · hybridAbstract read
In one paragraph

Article in Iranian journal of pharmaceutical research : IJPR, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Shadi DamoughBiotechnology Research Center, Pasteur Institute of Iran, Tehran, Iran.
Reyhaneh AlizadehDepartment of Chemical and Petroleum Engineering, Sharif University of Technology, Tehran, Iran.
Samira KomijaniBiotechnology Research Center, Pasteur Institute of Iran, Tehran, Iran.
Mahsa ShirinBiotechnology Research Center, Pasteur Institute of Iran, Tehran, Iran.
Ahmad AdeliBiotechnology Research Center, Pasteur Institute of Iran, Tehran, Iran.
Ladan MafakherThalassemia and Hemoglobinopathy Research Center, Health Research Institute, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran.
Fereidoun MahboudiBiotechnology Research Center, Pasteur Institute of Iran, Tehran, Iran.
Yeganeh Talebkhan GaroosiBiotechnology Research Center, Pasteur Institute of Iran, Tehran, Iran.
Pasteur Institute of Iran · IRAhvaz Jundishapur University of Medical Sciences · IRSharif University of Technology · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Overexpression of CD20 protein on the surface of B cells in lymphoma can be targeted by several anti-CD20 molecules. The development of accessible interactive epitopes is more favorable than the full-length transmembrane CD20 in the affinity assessment of anti-CD20 monoclonal antibodies (mAbs). Methods: The sequence of these epitopes was extracted, and the effects of different linker peptides and the location of histidine (His)-tag were computationally analyzed. The impact of thioredoxin (Trx)-tag on the folding of the selected construct and its interaction with rituximab was further investigated. The two final expression cassettes were expressed in Results: By homology modeling studies, C-terminal His-tagged structures represented more desirable folded structures. Validation of the models revealed that CD20 extracellular domain linked by the G Conclusions: Experimental in vitro studies confirmed the computationally calculated affinity of rituximab towards the two designed CD20 constructs. Also, the cell-based binding assessment of anti-CD20 mAbs could be substituted by the engineered extracellular domain of human CD20 protein.

Indexed as

AffinityCD20Molecular DynamicsResponse Surface MethodologyThioredoxin

Identifiers

PMID36942068
PMCPMC10024333
OpenAlexW4320913597

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.