Evidence map›Paper›PMID 36941256›Full record

ArticleNature communications2023

Digital nanoreactors to control absolute stoichiometry and spatiotemporal behavior of DNA receptors within lipid bilayers.

Vishal Maingi, Zhao Zhang, Chris Thachuk, Namita Sarraf, Edwin R Chapman, Paul W K Rothemund

Open access · goldFull text read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Vishal MaingiDepartment of Bioengineering, California Institute of Technology, Pasadena, CA, USA. maingivishal@gmail.com.ORCID 0000-0003-3861-7973
Zhao ZhangDepartment of Neuroscience and Howard Hughes Medical Institute, University of Wisconsin-Madison, 1111 Highland Avenue, Madison, WI, 53705, USA.
Chris ThachukPaul G. Allen School of Computer Science & Engineering, University of Washington, Seattle, WA, USA. thachuk@cs.washington.edu.ORCID 0000-0001-5913-1732
Namita SarrafDepartment of Bioengineering, California Institute of Technology, Pasadena, CA, USA.ORCID 0000-0001-8692-7429
Edwin R ChapmanDepartment of Neuroscience and Howard Hughes Medical Institute, University of Wisconsin-Madison, 1111 Highland Avenue, Madison, WI, 53705, USA. chapman@wisc.edu.ORCID 0000-0001-9787-8140
Paul W K RothemundDepartment of Bioengineering, California Institute of Technology, Pasadena, CA, USA. pwkr@dna.caltech.edu.ORCID 0000-0002-1653-3202
California Institute of Technology · USHoward Hughes Medical Institute · USUniversity of Washington · US

Funding

Synaptotagmin C2B Domain as a Ca2+ Sensing ModuleR01MH061876 · NIMH · UNIVERSITY OF WISCONSIN-MADISON · PI Edwin R Chapman · 2002 to 2026
$7.7M
Structure and dynamics of exocytotic fusion poresR35NS097362 · NINDS · UNIVERSITY OF WISCONSIN-MADISON · PI CHAPMAN, EDWIN R · 2017 to 2024
$4.6M
A DNA origami platform for measuring membrane protein interactionsR21MH125320 · NIMH · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI ROTHEMUND, PAUL W.K. · 2021 to 2022
$461k
Howard Hughes Medical InstituteNIMH NIH HHS R01 MH061876NIMH NIH HHS R21 MH125320NINDS NIH HHS R35 NS097362
6 · The paper itself

Abstract

Interactions between membrane proteins are essential for cell survival but are often poorly understood. Even the biologically functional ratio of components within a multi-subunit membrane complex-the native stoichiometry-is difficult to establish. Here we demonstrate digital nanoreactors that can control interactions between lipid-bound molecular receptors along three key dimensions: stoichiometric, spatial, and temporal. Each nanoreactor is based on a DNA origami ring, which both templates the synthesis of a liposome and provides tethering sites for DNA-based receptors (modelling membrane proteins). Receptors are released into the liposomal membrane using strand displacement and a DNA logic gate measures receptor heterodimer formation. High-efficiency tethering of receptors enables the kinetics of receptors in 1:1 and 2:2 absolute stoichiometries to be observed by bulk fluorescence, which in principle is generalizable to any ratio. Similar single-molecule-in-bulk experiments using DNA-linked membrane proteins could determine native stoichiometry and the kinetics of membrane protein interactions for applications ranging from signalling research to drug discovery.

Indexed as

Lipid BilayersLiposomesCarrier ProteinsDNAMembrane ProteinsNanotechnologyReceptors, Cell SurfaceCarrier ProteinsDNADNA receptorLipid BilayersLiposomesMembrane ProteinsReceptors, Cell Surface

Identifiers

PMID36941256
PMCPMC10027858
OpenAlexW4328048177

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.