Evidence map›Paper›PMID 36939272›Full record

ArticleOtolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery2023

Microbial Changes Associated With Oral Cavity Cancer Progression.

Kenneth Yan, Samuel Auger, Ashley Diaz, Julia Naman, Ramya Vemulapalli, Rifat Hasina, Evgeny Izumchenko, Benjamin Shogan, Nishant Agrawal

Open access · greenAbstract read
In one paragraph

Article in Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 15 citations in OpenAlex.

  1. Pooled it
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  3. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Kenneth YanDepartment of Otolaryngology-Head and Neck Surgery, Rutgers New Jersey Medical School, Newark, New Jersey, USA.ORCID 0000-0002-0601-8127
Samuel AugerDepartment of Surgery, Section of Otolaryngology, University of Chicago Medicine, Chicago, Illinois, USA.
Ashley DiazPritzker School of Medicine, University of Chicago, Chicago, Illinois, USA.
Julia NamanDepartment of Surgery, Section of Otolaryngology, University of Chicago Medicine, Chicago, Illinois, USA.
Ramya VemulapalliDepartment of Surgery, Section of Otolaryngology, University of Chicago Medicine, Chicago, Illinois, USA.
Rifat HasinaDepartment of Surgery, Section of Otolaryngology, University of Chicago Medicine, Chicago, Illinois, USA.
Evgeny IzumchenkoDepartment of Medicine, Section of Hematology and Oncology, University of Chicago Medicine, Chicago, Illinois, USA.
Benjamin ShoganDepartment of Medicine, Section of Hematology and Oncology, University of Chicago Medicine, Chicago, Illinois, USA.
Nishant AgrawalDepartment of Surgery, Section of Otolaryngology, University of Chicago Medicine, Chicago, Illinois, USA.
University of Chicago · USUniversity of Illinois Chicago · USRutgers, The State University of New Jersey · US

Funding

Delineating chromatin-related gene expression signatures as a function of HNSCC progressionR01DE027809 · NIDCR · UNIVERSITY OF MARYLAND BALTIMORE · PI GAYKALOVA, DARIA A, IZUMCHENKO, EVGENY (EUGENE) G · 2019 to 2023
$2.6M
Somatic Mutations in Tissue and Saliva as Prognostic and Screening Biomarkers for Oral PremalignancyR01DE028674 · NIDCR · UNIVERSITY OF CHICAGO · PI AGRAWAL, NISHANT, LINGEN, MARK W. · 2020 to 2024
$1.9M
Elucidating the role and mechanisms by which collagenase producing intestinal bacteria promote colorectal cancer recurrence and metastasis following surgery.K08CA248957 · NCI · UNIVERSITY OF CHICAGO · PI SHOGAN, BENJAMIN · 2021 to 2025
$1.2M
NCI NIH HHS K08 CA248957NIDCR NIH HHS R01 DE027809NIDCR NIH HHS R01 DE028674
6 · The paper itself

Abstract

objectiveTo examine the oral microbiome in the context of oral cavity squamous cell carcinoma. STUDY

designBasic science research.

settingAcademic medical center.

methodsOral swabs were collected from patients presenting to the operating room for management of oral cavity squamous cell carcinoma and from age- and sex-matched control patients receiving surgery for unrelated benign conditions. 16S ribosomal RNA (rRNA) sequencing was performed on genetic material obtained from swabs. A bacterial rRNA gene library was created and sequence reads were sorted into taxonomic units.

resultsThirty-one control patients (17 males) and 35 cancer patients (21 males) were enrolled. Ages ranged from 23 to 89 (median 63) for control patients and 35 to 86 (median 66) for cancer patients. Sixty-one percent of control patients and 63% of cancer patients were smokers. 16S analyses demonstrated a significant decrease in Streptococcus genera in oral cancer patients (34.11% vs 21.74% of the population, p = .04). Increases in Fusobacterium, Peptostreptococcus, Parvimonas, and Neisseria were also found. The abundance of these bacteria correlated with tumor T-stage.

conclusion16S rRNA sequencing demonstrated changes in bacterial populations in oral cavity cancer and its progression compared to noncancer controls. We found increases in bacteria genera that correspond with tumor stage-Fusobacteria, Peptostreptococcus, Parvimonas, Neisseria, and Treponema. These data suggest that oral cancer creates an environment to facilitate foreign bacterial growth, rather than implicating a specific bacterial species in carcinogenesis. These bacteria can be employed as a potential marker for tumor progression or interrogated to better characterize the tumor microenvironment.

Indexed as

Carcinoma, Squamous CellMouth NeoplasmsBacteriaHead and Neck NeoplasmsHumansMaleRNA, Ribosomal, 16SSquamous Cell Carcinoma of Head and NeckTumor MicroenvironmentRNA, Ribosomal, 16S16S sequencingmicrobiomeoral cavity cancer

Identifiers

PMID36939272
PMCPMC10213157
OpenAlexW4317830401

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.