Evidence map›Paper›PMID 36937301›Full record

ArticleFrontiers in microbiology2023

Diversity and function of soybean rhizosphere microbiome under nature farming.

Dominic V A Agyekum, Tatsuyuki Kobayashi, Khondoker M G Dastogeer, Michiko Yasuda, Elsie Sarkodee-Addo, Safirah T N Ratu, Qicong Xu, Takaaki Miki, Eri Matsuura, Shin Okazaki

Open access · goldFull text read
In one paragraph

Article in Frontiers in microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
11.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Dominic V A AgyekumUnited Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology, Fuchu, Japan.
Tatsuyuki KobayashiFaculty of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Japan.
Khondoker M G DastogeerDepartment of Plant Pathology, Faculty of Agriculture, Bangladesh Agricultural University, Mymensingh, Bangladesh.
Michiko YasudaFaculty of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Japan.
Elsie Sarkodee-AddoFaculty of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Japan.
Safirah T N RatuInstitute of Global Innovation Research, Tokyo University of Agriculture and Technology, Fuchu, Japan.
Qicong XuInternational Nature Farming Research Center, Nagano, Japan.
Takaaki MikiInternational Nature Farming Research Center, Nagano, Japan.
Eri MatsuuraCollege of Agriculture, Ibaraki University, Mito, Japan.
Shin OkazakiUnited Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology, Fuchu, Japan.
Tokyo University of Agriculture and Technology · JPNagano Prefecture Forestry Research Center · JPBangladesh Agricultural University · BDIbaraki University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nature farming is a farming system that entails cultivating crops without using chemical fertilizers and pesticides. The present study investigated the bacterial and fungal communities in the rhizosphere of soybean grown in conventional and nature farming soils using wild-type and non-nodulating mutant soybean. The effect of soil fumigant was also analyzed to reveal its perturbation of microbial communities and subsequent effects on the growth of soybean. Overall, the wild-type soybean exhibited a better growth index compared to mutant soybean and especially in nature farming. Nodulation and arbuscular mycorrhiza (AM) fungi colonization were higher in plants under nature farming than in conventionally managed soil; however, fumigation drastically affected these symbioses with greater impacts on plants in nature farming soil. The rhizosphere microbiome diversity in nature farming was higher than that in conventional farming for both cultivars. However, the diversity was significantly decreased after fumigation treatment with a greater impact on nature farming. Principal coordinate analysis revealed that nature farming and conventional farming soil harbored distinct microbial communities and that soil fumigation significantly altered the communities in nature farming soils but not in conventional farming soils. Intriguingly, some beneficial microbial taxa related to plant growth and health, including

Indexed as

fumigationmicrobiomenature farmingrhizospheresoybeansymbiosis

Identifiers

PMID36937301
PMCPMC10014912
OpenAlexW4322744096

What OpenQuestion holds

Textfull text, public
LicenceCC BY
reference markers read7
measurements read80
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.