Evidence map›Paper›PMID 36933215›Full record

ArticleCell reports2023

High-throughput functional analysis of autism genes in zebrafish identifies convergence in dopaminergic and neuroimmune pathways.

Hellen Weinschutz Mendes, Uma Neelakantan, Yunqing Liu, Sarah E Fitzpatrick, Tianying Chen, Weimiao Wu, April Pruitt, David S Jin, Priyanka Jamadagni, Marina Carlson and 22 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed, 1 pooled it
11.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 1 synthesis or guideline pooled it, 78 citations in OpenAlex.

  1. Pooled it
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  6. Review
  7. Pharmaco-behavioral profiling identifies suppressors of autism gene-associated phenotypes in zebrafish.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  18. Autism-associatedProceedings of the National Academy of Sciences of the United States of America · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors at 3 institutions in 2 countries.

Hellen Weinschutz MendesChild Study Center, Yale School of Medicine, New Haven, CT 06510, USA.
Uma NeelakantanChild Study Center, Yale School of Medicine, New Haven, CT 06510, USA.
Yunqing LiuDepartment of Biostatistics, Yale School of Public Health, New Haven, CT 06510, USA.
Sarah E FitzpatrickChild Study Center, Yale School of Medicine, New Haven, CT 06510, USA; Department of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA; Interdepartmental Neuroscience Program, Yale University, New Haven, CT 06510, USA; MD-PhD Program, Yale School of Medicine, New Haven, CT 06510, USA.
Tianying ChenChild Study Center, Yale School of Medicine, New Haven, CT 06510, USA.
Weimiao WuDepartment of Biostatistics, Yale School of Public Health, New Haven, CT 06510, USA.
April PruittChild Study Center, Yale School of Medicine, New Haven, CT 06510, USA; Department of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA; Interdepartmental Neuroscience Program, Yale University, New Haven, CT 06510, USA.
David S JinChild Study Center, Yale School of Medicine, New Haven, CT 06510, USA; Department of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA; Interdepartmental Neuroscience Program, Yale University, New Haven, CT 06510, USA; Department of Neurology, Yale School of Medicine, New Haven, CT 06510, USA.
Priyanka JamadagniChild Study Center, Yale School of Medicine, New Haven, CT 06510, USA.
Marina CarlsonChild Study Center, Yale School of Medicine, New Haven, CT 06510, USA; Department of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA; Interdepartmental Neuroscience Program, Yale University, New Haven, CT 06510, USA.
Cheryl M LacadieDepartment of Radiology and Biomedical Imaging, Yale School of Medicine, New Haven, CT 06510, USA.
Kristen D EnriquezChild Study Center, Yale School of Medicine, New Haven, CT 06510, USA.
Ningshan LiDepartment of Biostatistics, Yale School of Public Health, New Haven, CT 06510, USA; SJTU-Yale Joint Center for Biostatistics and Data Science, Department of Bioinformatics and Biostatistics, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China.
Dejian ZhaoDepartment of Genetics, Yale Center for Genome Analysis, Yale School of Medicine, New Haven, CT 06510, USA.
Sundas IjazChild Study Center, Yale School of Medicine, New Haven, CT 06510, USA.
Catalina SakaiChild Study Center, Yale School of Medicine, New Haven, CT 06510, USA.
Christina SziChild Study Center, Yale School of Medicine, New Haven, CT 06510, USA.
Brendan RooneyChild Study Center, Yale School of Medicine, New Haven, CT 06510, USA.
Marcus GhoshDepartment of Cell and Developmental Biology, University College London, Gower Street, London WC1E 6BT, UK.
Ijeoma NwabudikeChild Study Center, Yale School of Medicine, New Haven, CT 06510, USA; Interdepartmental Neuroscience Program, Yale University, New Haven, CT 06510, USA; MD-PhD Program, Yale School of Medicine, New Haven, CT 06510, USA; Department of Psychiatry, Yale School of Medicine, New Haven, CT 06510, USA.
Andrea GorodezkyChild Study Center, Yale School of Medicine, New Haven, CT 06510, USA.
Sumedha ChowdhuryChild Study Center, Yale School of Medicine, New Haven, CT 06510, USA.
Meeraal ZaheerChild Study Center, Yale School of Medicine, New Haven, CT 06510, USA.
Sarah McLaughlinChild Study Center, Yale School of Medicine, New Haven, CT 06510, USA.
Joseph M FernandezChild Study Center, Yale School of Medicine, New Haven, CT 06510, USA.
Jia WuChild Study Center, Yale School of Medicine, New Haven, CT 06510, USA.
Jeffrey A EilbottChild Study Center, Yale School of Medicine, New Haven, CT 06510, USA.
Brent Vander WykDepartment of Internal Medicine, Section of Geriatrics, Yale School of Medicine, New Haven, CT 06510, USA.
Jason RihelDepartment of Cell and Developmental Biology, University College London, Gower Street, London WC1E 6BT, UK.
Xenophon PapademetrisDepartment of Radiology and Biomedical Imaging, Yale School of Medicine, New Haven, CT 06510, USA; Department of Biomedical Engineering, Yale University, New Haven, CT 06510, USA.
Zuoheng WangDepartment of Biostatistics, Yale School of Public Health, New Haven, CT 06510, USA.
Ellen J HoffmanChild Study Center, Yale School of Medicine, New Haven, CT 06510, USA; Department of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA. Electronic address: ellen.hoffman@yale.edu.
Yale University · USUniversity College London · GBCancer Research And Biostatistics · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007205 · NIGMS · YALE UNIVERSITY · PI KAZMIERCZAK, BARBARA I · 1985 to 2019
$42.9M
Medical Scientist Training ProgramT32GM136651 · NIGMS · YALE UNIVERSITY · PI BARBARA I KAZMIERCZAK · 2020 to 2026
$16.5M
PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM007499 · NIGMS · YALE UNIVERSITY · PI CARLSON, JOHN R, REINKE, VALERIE J · 1985 to 2022
$13.9M
Interdepartmental Neuroscience Program (INP)T32NS041228 · NINDS · YALE UNIVERSITY · PI Charles A Greer, Marina R Picciotto · 2001 to 2026
$12.0M
High-throughput Functional Analysis of Autism Risk GenesR01MH116002 · NIMH · YALE UNIVERSITY · PI ELLEN J HOFFMAN · 2018 to 2026
$4.5M
Predoctoral Training Program in GeneticsT32GM148332 · NIGMS · YALE UNIVERSITY · PI John R Carlson, Mandar Deepak Muzumdar · 2023 to 2026
$3.0M
The Role of the ASD Risk Gene CHD8 in Neural DevelopmentF30MH132282 · NIMH · YALE UNIVERSITY · PI FITZPATRICK, SARAH E. · 2022 to 2025
$153k
Functional Analysis of Pathogenic Human PTEN Variants in Early NeurodevelopmentF31NS130899 · NINDS · YALE UNIVERSITY · PI CARLSON, MARINA ALISE · 2023 to 2025
$98k
NIGMS NIH HHS T32 GM007205NIGMS NIH HHS T32 GM007499NIGMS NIH HHS T32 GM136651NIGMS NIH HHS T32 GM148332NIMH NIH HHS F30 MH132282NIMH NIH HHS R01 MH116002NINDS NIH HHS F31 NS130899NINDS NIH HHS T32 NS041228Wellcome Trust
6 · The paper itself

Abstract

Advancing from gene discovery in autism spectrum disorders (ASDs) to the identification of biologically relevant mechanisms remains a central challenge. Here, we perform parallel in vivo functional analysis of 10 ASD genes at the behavioral, structural, and circuit levels in zebrafish mutants, revealing both unique and overlapping effects of gene loss of function. Whole-brain mapping identifies the forebrain and cerebellum as the most significant contributors to brain size differences, while regions involved in sensory-motor control, particularly dopaminergic regions, are associated with altered baseline brain activity. Finally, we show a global increase in microglia resulting from ASD gene loss of function in select mutants, implicating neuroimmune dysfunction as a key pathway relevant to ASD biology.

Indexed as

Autism Spectrum DisorderAutistic DisorderAnimalsBrainBrain MappingZebrafishautism spectrum disorderCP: Neurosciencedopaminergic neuronsgeneticsmicroglianeurodevelopmentzebrafish

Identifiers

PMID36933215
PMCPMC10277173
OpenAlexW4327747650

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.