Evidence map›Paper›PMID 36931659›Full record

ArticleGenes & development2023

Pioneer factor ASCL1 cooperates with the mSWI/SNF complex at distal regulatory elements to regulate human neural differentiation.

Oana Păun, Yu Xuan Tan, Harshil Patel, Stephanie Strohbuecker, Avinash Ghanate, Clementina Cobolli-Gigli, Miriam Llorian Sopena, Lina Gerontogianni, Robert Goldstone, Siew-Lan Ang and 2 more

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 57 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Oana PăunNeural Stem Cell Biology Laboratory, the Francis Crick Institute, London NW1 1AT, United Kingdom.ORCID 0000-0002-1673-2818
Yu Xuan TanNeural Stem Cell Biology Laboratory, the Francis Crick Institute, London NW1 1AT, United Kingdom.ORCID 0000-0001-7515-8118
Harshil PatelBioinformatics and Biostatistics Science and Technology Platform, the Francis Crick Institute, London NW1 1AT, United Kingdom.ORCID 0000-0003-2707-7940
Stephanie StrohbueckerBioinformatics and Biostatistics Science and Technology Platform, the Francis Crick Institute, London NW1 1AT, United Kingdom.ORCID 0000-0002-9781-6879
Avinash GhanateBioinformatics and Biostatistics Science and Technology Platform, the Francis Crick Institute, London NW1 1AT, United Kingdom.ORCID 0000-0002-6284-7667
Clementina Cobolli-GigliNeural Stem Cell Biology Laboratory, the Francis Crick Institute, London NW1 1AT, United Kingdom.
Miriam Llorian SopenaBioinformatics and Biostatistics Science and Technology Platform, the Francis Crick Institute, London NW1 1AT, United Kingdom.
Lina GerontogianniBioinformatics and Biostatistics Science and Technology Platform, the Francis Crick Institute, London NW1 1AT, United Kingdom.
Robert GoldstoneBioinformatics and Biostatistics Science and Technology Platform, the Francis Crick Institute, London NW1 1AT, United Kingdom.
Siew-Lan AngNeural Stem Cell Biology Laboratory, the Francis Crick Institute, London NW1 1AT, United Kingdom.
François GuillemotNeural Stem Cell Biology Laboratory, the Francis Crick Institute, London NW1 1AT, United Kingdom; cristina.dias@crick.ac.uk cristina.dias@kcl.ac.uk francois.guillemot@crick.ac.uk.
Cristina DiasNeural Stem Cell Biology Laboratory, the Francis Crick Institute, London NW1 1AT, United Kingdom; cristina.dias@crick.ac.uk cristina.dias@kcl.ac.uk francois.guillemot@crick.ac.uk.ORCID 0000-0001-5411-4984
The Francis Crick Institute · GBKing's College London · GB

Funding

Cancer Research UK CC2033Medical Research Council CC2033Medical Research Council MR/R006237/1Wellcome Trust 106187/Z/14/ZWellcome Trust 209568/Z/17/ZWellcome Trust CC2033
6 · The paper itself

Abstract

Pioneer transcription factors are thought to play pivotal roles in developmental processes by binding nucleosomal DNA to activate gene expression, though mechanisms through which pioneer transcription factors remodel chromatin remain unclear. Here, using single-cell transcriptomics, we show that endogenous expression of neurogenic transcription factor ASCL1, considered a classical pioneer factor, defines a transient population of progenitors in human neural differentiation. Testing ASCL1's pioneer function using a knockout model to define the unbound state, we found that endogenous expression of ASCL1 drives progenitor differentiation by

Indexed as

Gene Expression RegulationTranscription FactorsBasic Helix-Loop-Helix ProteinsCell DifferentiationChromatinChromatin Assembly and DisassemblyHumansASCL1 protein, humanBasic Helix-Loop-Helix ProteinsChromatinTranscription FactorsASCL1ATAC-seqChIP-seqchromatin regulationmSWI/SNFneural stem cellneurogenesispioneer transcription factorscRNA-seq

Identifiers

PMID36931659
PMCPMC10111863
OpenAlexW4327811470

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.