Evidence map›Paper›PMID 36930706›Full record

ArticleScience advances2023

Plant and prokaryotic TIR domains generate distinct cyclic ADPR NADase products.

Adam M Bayless, Sisi Chen, Sam C Ogden, Xiaoyan Xu, John D Sidda, Mohammad K Manik, Sulin Li, Bostjan Kobe, Thomas Ve, Lijiang Song and 3 more

Open access · goldFull text read
In one paragraph

Article in Science advances, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 1 pooled it
15.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 1 synthesis or guideline pooled it, 61 citations in OpenAlex.

  1. Pooled it
  2. Mechanisms and balanced regulation of plant immunity.Nature reviews. Molecular cell biology · 2026
    Review
  3. Article
  4. Article
  5. Article
  6. Phage RyR-domain proteins degrade ADPR-based immune signals and fuel NADbioRxiv : the preprint server for biology · 2026
    Article
  7. TIR-like NADases act in bacterial immunity and the RNA vault.bioRxiv : the preprint server for biology · 2026
    Article
  8. Plant NLRs are getting into higher-order architectures.The Plant journal : for cell and molecular biology · 2026
    Review
  9. Molecular mechanisms of plant NLR activation and signalling.The Plant journal : for cell and molecular biology · 2026
    Review
  10. Review
  11. TheProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  12. Coordinated actions of NLR-assembled and glutamate receptor-like calcium channels in plant effector-triggered immunity.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 4 countries.

Adam M BaylessDepartment of Biology, Colorado State University, Fort Collins, CO 80523, USA.ORCID 0000-0002-8773-4482
Sisi ChenNational Key Laboratory of Plant Molecular Genetics, Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China.ORCID 0000-0002-2450-7063
Sam C OgdenDepartment of Biology, Colorado State University, Fort Collins, CO 80523, USA.ORCID 0000-0002-4244-8095
Xiaoyan XuNational Key Laboratory of Plant Molecular Genetics, Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China.ORCID 0000-0001-7950-6706
John D SiddaSchool of Life Sciences, University of Warwick, Coventry CV47AL, UK.ORCID 0000-0002-3135-0885
Mohammad K ManikThe University of Queensland, School of Chemistry and Molecular Biosciences, Australian Infectious Diseases Research Centre and Institute for Molecular Bioscience, Brisbane, QLD 4072, Australia.ORCID 0000-0001-9510-2250
Sulin LiThe University of Queensland, School of Chemistry and Molecular Biosciences, Australian Infectious Diseases Research Centre and Institute for Molecular Bioscience, Brisbane, QLD 4072, Australia.ORCID 0000-0002-6116-4362
Bostjan KobeThe University of Queensland, School of Chemistry and Molecular Biosciences, Australian Infectious Diseases Research Centre and Institute for Molecular Bioscience, Brisbane, QLD 4072, Australia.ORCID 0000-0001-9413-9166
Thomas VeInstitute for Glycomics, Griffith University, Southport, QLD 4222, Australia.ORCID 0000-0002-0113-1905
Lijiang SongSchool of Life Sciences, University of Warwick, Coventry CV47AL, UK.ORCID 0000-0002-5843-005X
Murray GrantSchool of Life Sciences, University of Warwick, Coventry CV47AL, UK.ORCID 0000-0003-3357-0264
Li WanNational Key Laboratory of Plant Molecular Genetics, Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China.ORCID 0000-0002-0839-3748
Marc T NishimuraDepartment of Biology, Colorado State University, Fort Collins, CO 80523, USA.ORCID 0000-0003-4666-6900
Chinese Academy of Sciences · CNColorado State University · USThe University of Queensland · AUUniversity of Warwick · GBGriffith University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Toll/interleukin-1 receptor (TIR) domain proteins function in cell death and immunity. In plants and bacteria, TIR domains are often enzymes that produce isomers of cyclic adenosine 5'-diphosphate-ribose (cADPR) as putative immune signaling molecules. The identity and functional conservation of cADPR isomer signals is unclear. A previous report found that a plant TIR could cross-activate the prokaryotic Thoeris TIR-immune system, suggesting the conservation of plant and prokaryotic TIR-immune signals. Here, we generate autoactive Thoeris TIRs and test the converse hypothesis: Do prokaryotic Thoeris TIRs also cross-activate plant TIR immunity? Using in planta and in vitro assays, we find that Thoeris and plant TIRs generate overlapping sets of cADPR isomers and further clarify how plant and Thoeris TIRs activate the Thoeris system via producing 3'cADPR. This study demonstrates that the TIR signaling requirements for plant and prokaryotic immune systems are distinct and that TIRs across kingdoms generate a diversity of small-molecule products.

Indexed as

Cyclic ADP-RiboseNAD+ NucleosidaseBacteriaPlantsReceptors, Interleukin-1Signal TransductionCyclic ADP-RiboseNAD+ NucleosidaseReceptors, Interleukin-1

Identifiers

PMID36930706
PMCPMC10022894
OpenAlexW4327711803

What OpenQuestion holds

Textfull text, public
LicenceCC BY
reference markers read1
measurements read56
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.