Evidence map›Paper›PMID 36930682›Full record

ArticlePLoS biology2023

TDP-43 and other hnRNPs regulate cryptic exon inclusion of a key ALS/FTD risk gene, UNC13A.

Yuka Koike, Sarah Pickles, Virginia Estades Ayuso, Karen Jansen-West, Yue A Qi, Ziyi Li, Lillian M Daughrity, Mei Yue, Yong-Jie Zhang, Casey N Cook and 4 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 37 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed, 1 pooled it
15.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 1 synthesis or guideline pooled it, 70 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. TDP-43: [GU]-ardian of the transcriptome.Molecular neurodegeneration · 2026
    Review
  4. Article
  5. Article
  6. From development to disease: the neuronal role of hnRNPs through the lens ofFrontiers in cell and developmental biology · 2026
    Review
  7. Article
  8. Article
  9. Article
  10. bioRxiv : the preprint server for biology · 2025
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Cryptic Splicing of GAP43 mRNA is a Novel Hallmark of TDP-43-Associated ALS and AD.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Yuka KoikeDepartment of Neuroscience, Mayo Clinic, Jacksonville, Florida, United States of America.
Sarah PicklesDepartment of Neuroscience, Mayo Clinic, Jacksonville, Florida, United States of America.
Virginia Estades AyusoDepartment of Neuroscience, Mayo Clinic, Jacksonville, Florida, United States of America.
Karen Jansen-WestDepartment of Neuroscience, Mayo Clinic, Jacksonville, Florida, United States of America.
Yue A QiCenter for Alzheimer's and Related Dementias, National Institute on Aging, NIH, Bethesda, Maryland, United States of America.
Ziyi LiCenter for Alzheimer's and Related Dementias, National Institute on Aging, NIH, Bethesda, Maryland, United States of America.
Lillian M DaughrityDepartment of Neuroscience, Mayo Clinic, Jacksonville, Florida, United States of America.
Mei YueDepartment of Neuroscience, Mayo Clinic, Jacksonville, Florida, United States of America.
Yong-Jie ZhangDepartment of Neuroscience, Mayo Clinic, Jacksonville, Florida, United States of America.
Casey N CookDepartment of Neuroscience, Mayo Clinic, Jacksonville, Florida, United States of America.
Dennis W DicksonDepartment of Neuroscience, Mayo Clinic, Jacksonville, Florida, United States of America.
Michael WardCenter for Alzheimer's and Related Dementias, National Institute on Aging, NIH, Bethesda, Maryland, United States of America.
Leonard PetrucelliDepartment of Neuroscience, Mayo Clinic, Jacksonville, Florida, United States of America.ORCID 0000-0003-2959-129X
Mercedes PrudencioDepartment of Neuroscience, Mayo Clinic, Jacksonville, Florida, United States of America.ORCID 0000-0002-4894-4858
Jacksonville College · USMayo Clinic in Florida · USNational Institute on Aging · USNational Institute of Neurological Disorders and Stroke · US

Funding

TDP-43 Loss-of-Function: Biology to BiomarkersP01AG019724 · NIA · UNIVERSITY OF PENNSYLVANIA · PI Jennifer Merrilees · 2002 to 2026
$67.2M
Project 3: Neuropathology of the multi-proteinopathy of c9FTD/ALS.P01NS084974 · NINDS · MAYO CLINIC JACKSONVILLE · PI PETRUCELLI, LEONARD · 2014 to 2024
$17.6M
Expanding insights into FTD disease mechanismsR35NS097273 · NINDS · MAYO CLINIC JACKSONVILLE · PI PETRUCELLI, LEONARD · 2017 to 2024
$10.6M
Human Biomarkers CoreU54NS123743 · NINDS · STANFORD UNIVERSITY · PI GITLER, AARON D. · 2021 to 2025
$8.2M
Stathmin-2 and TDP-43 neurodegeneration in Alzheimer’s and multi-etiology dementiasRF1NS120992 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI Keith A Josephs, Mercedes Prudencio · 2021 to 2026
$4.2M
Poly(ADP-ribose) promotes the condensation and toxicity of C9orf72 arginine-rich dipeptide repeat proteinsR01NS117461 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI Tania France Gendron, Yongjie Zhang · 2021 to 2026
$2.9M
Mechanistic insights into the link between the A152T risk variant and tauopathyR01AG063780 · NIA · MAYO CLINIC JACKSONVILLE · PI COOK, CASEY N · 2020 to 2024
$2.5M
Impact of T cells on the CNS during aging and Alzheimer’s diseaseR01AG065219 · NIA · MAYO CLINIC JACKSONVILLE · PI COOK, CASEY N · 2020 to 2024
$2.4M
NIA NIH HHS P01 AG019724NIA NIH HHS R01 AG063780NIA NIH HHS R01 AG065219NINDS NIH HHS P01 NS084974NINDS NIH HHS R01 NS117461NINDS NIH HHS R35 NS097273NINDS NIH HHS RF1 NS120992NINDS NIH HHS U54 NS123743
6 · The paper itself

Abstract

A major function of TAR DNA-binding protein-43 (TDP-43) is to repress the inclusion of cryptic exons during RNA splicing. One of these cryptic exons is in UNC13A, a genetic risk factor for amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD). The accumulation of cryptic UNC13A in disease is heightened by the presence of a risk haplotype located within the cryptic exon itself. Here, we revealed that TDP-43 extreme N-terminus is important to repress UNC13A cryptic exon inclusion. Further, we found hnRNP L, hnRNP A1, and hnRNP A2B1 bind UNC13A RNA and repress cryptic exon inclusion, independently of TDP-43. Finally, higher levels of hnRNP L protein associate with lower burden of UNC13A cryptic RNA in ALS/FTD brains. Our findings suggest that while TDP-43 is the main repressor of UNC13A cryptic exon inclusion, other hnRNPs contribute to its regulation and may potentially function as disease modifiers.

Indexed as

Amyotrophic Lateral SclerosisFrontotemporal DementiaHeterogeneous-Nuclear Ribonucleoprotein LDNA-Binding ProteinsExonsHeterogeneous-Nuclear RibonucleoproteinsHumansNerve Tissue ProteinsRNADNA-Binding ProteinsHeterogeneous-Nuclear Ribonucleoprotein LHeterogeneous-Nuclear RibonucleoproteinsNerve Tissue ProteinsRNA

Identifiers

PMID36930682
PMCPMC10057836
OpenAlexW4327680686

What OpenQuestion holds

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LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.