Evidence map›Paper›PMID 36930432›Full record

ArticlePhotosynthesis research2023

Atomic force microscopic analysis of the light-harvesting complex 2 from purple photosynthetic bacterium Thermochromatium tepidum.

Masayuki Morimoto, Haruna Hirao, Masaharu Kondo, Takehisa Dewa, Yukihiro Kimura, Zheng-Yu Wang-Otomo, Hitoshi Asakawa, Yoshitaka Saga

Abstract read
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In one paragraph

Article in Photosynthesis research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Supramolecular chirality in self-assembly of zinc protobacteriochlorophyll-d analogs possessing enantiomeric esterifying groups.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Masayuki Morimoto *Nanomaterials Research Institute (NanoMaRi), Kanazawa University, Kanazawa, 920-1192, Japan.
Haruna Hirao *Faculty of Science and Engineering, Kindai University, Higashi-Osaka, Osaka, 577-8502, Japan.
Masaharu KondoGraduate School of Engineering, Nagoya Institute of Technology, Nagoya, 466-8555, Japan.
Takehisa DewaGraduate School of Engineering, Nagoya Institute of Technology, Nagoya, 466-8555, Japan.
Yukihiro KimuraGraduate School of Agricultural Science, Kobe University, Kobe, 657-8501, Japan.
Zheng-Yu Wang-OtomoFaculty of Science, Ibaraki University, Mito, 310-8512, Japan.
Hitoshi AsakawaNanomaterials Research Institute (NanoMaRi), Kanazawa University, Kanazawa, 920-1192, Japan. hi_asa@staff.kanazawa-u.ac.jp.
Yoshitaka SagaFaculty of Science and Engineering, Kindai University, Higashi-Osaka, Osaka, 577-8502, Japan. saga@chem.kindai.ac.jp.
Kanazawa University · JPKindai University · JPNagoya Institute of Technology · JPIbaraki University · JPKobe University · JP

Funding

Japan Society for the Promotion of Science JP20H02686Japan Society for the Promotion of Science JP21H01985Japan Society for the Promotion of Science JP21K06104
6 · The paper itself

Abstract

Structural information on the circular arrangements of repeating pigment-polypeptide subunits in antenna proteins of purple photosynthetic bacteria is a clue to a better understanding of molecular mechanisms for the ring-structure formation and efficient light harvesting of such antennas. Here, we have analyzed the ring structure of light-harvesting complex 2 (LH2) from the thermophilic purple bacterium Thermochromatium tepidum (tepidum-LH2) by atomic force microscopy. The circular arrangement of the tepidum-LH2 subunits was successfully visualized in a lipid bilayer. The average top-to-top distance of the ring structure, which is correlated with the ring size, was 4.8 ± 0.3 nm. This value was close to the top-to-top distance of the octameric LH2 from Phaeospirillum molischianum (molischianum-LH2) by the previous analysis. Gaussian distribution of the angles of the segments consisting of neighboring subunits in the ring structures of tepidum-LH2 yielded a median of 44°, which corresponds to the angle for the octameric circular arrangement (45°). These results indicate that tepidum-LH2 has a ring structure consisting of eight repeating subunits. The coincidence of an octameric ring structure of tepidum-LH2 with that of molischianum-LH2 is consistent with the homology of amino acid sequences of the polypeptides between tepidum-LH2 and molischianum-LH2.

Indexed as

ChromatiaceaeLight-Harvesting Protein ComplexesBacterial ProteinsMicroscopy, Atomic ForcePeptidesProteobacteriaBacterial ProteinsLight-Harvesting Protein ComplexesPeptidesAtomic force microscopyLight-harvesting proteinPurple photosynthetic bacteriaRing structure

Identifiers

PMID36930432
OpenAlexW4327675515

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.