Evidence map›Paper›PMID 36928278›Full record

ArticleMicrobes and environments2023

A Fast and Easy Method to Co-extract DNA and RNA from an Environmental Microbial Sample.

Yusuke Okazaki, Tuyen Thi Nguyen, Arisa Nishihara, Hisashi Endo, Hiroyuki Ogata, Shin-Ichi Nakano, Hideyuki Tamaki

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Article in Microbes and environments, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yusuke OkazakiInstitute for Chemical Research, Kyoto University.
Tuyen Thi NguyenInstitute for Chemical Research, Kyoto University.
Arisa NishiharaBioproduction Research Institute, National Institute of Advanced Industrial Science and Technology.
Hisashi EndoInstitute for Chemical Research, Kyoto University.
Hiroyuki OgataInstitute for Chemical Research, Kyoto University.
Shin-Ichi NakanoCenter for Ecological Research, Kyoto University.
Hideyuki TamakiBioproduction Research Institute, National Institute of Advanced Industrial Science and Technology.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We herein propose a fast and easy DNA and RNA co-extraction method for environmental microbial samples. It combines bead beating and phenol-chloroform phase separation followed by the separation and purification of DNA and RNA using the Qiagen AllPrep DNA/RNA mini kit. With a handling time of ~3 h, our method simultaneously extracted high-quality DNA (peak size >10-15‍ ‍kb) and RNA (RNA integrity number >6) from lake bacterioplankton filtered samples. The method is also applicable to low-biomass samples (expected DNA or RNA yield <50‍ ‍ng) and eukaryotic microbial samples, providing an easy option for more versatile eco-genomic applications.

Indexed as

DNARNAGenomicsPhenolDNAPhenolRNADNA extractionlong-read metagenomemetatranscriptomemethodologyRNA extraction

Identifiers

PMID36928278
PMCPMC10037101

What OpenQuestion holds

Textfull text, public
LicenceCC BY
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measurements read10
identifiers read1
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.