Evidence map›Paper›PMID 36927025›Full record

ArticleScience (New York, N.Y.)2023

Bacteria require phase separation for fitness in the mammalian gut.

Emilia Krypotou, Guy E Townsend, Xiaohui Gao, Shoichi Tachiyama, Jun Liu, Nick D Pokorzynski, Andrew L Goodman, Eduardo A Groisman

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. PAR-Driven Condensation Maintains Stalled Replication Fork Stability.bioRxiv : the preprint server for biology · 2026
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Mechanisms and Pathological Significance of Liquid-Liquid Phase Separation in Bacteria.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
    Review
  18. Review
  19. Review
  20. APEX2 proximity labeling of RNA in bacteria.bioRxiv : the preprint server for biology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Emilia KrypotouDepartment of Microbial Pathogenesis, Yale School of Medicine, 295 Congress Avenue, New Haven, CT 06536, USA.ORCID 0000-0003-3258-9983
Guy E TownsendDepartment of Microbial Pathogenesis, Yale School of Medicine, 295 Congress Avenue, New Haven, CT 06536, USA.ORCID 0000-0002-8231-3769
Xiaohui GaoDepartment of Microbial Pathogenesis, Yale School of Medicine, 295 Congress Avenue, New Haven, CT 06536, USA.ORCID 0000-0002-0568-5251
Shoichi TachiyamaDepartment of Microbial Pathogenesis, Yale School of Medicine, 295 Congress Avenue, New Haven, CT 06536, USA.ORCID 0000-0003-2010-212X
Jun LiuDepartment of Microbial Pathogenesis, Yale School of Medicine, 295 Congress Avenue, New Haven, CT 06536, USA.
Nick D PokorzynskiDepartment of Microbial Pathogenesis, Yale School of Medicine, 295 Congress Avenue, New Haven, CT 06536, USA.ORCID 0000-0003-2438-2368
Andrew L GoodmanDepartment of Microbial Pathogenesis, Yale School of Medicine, 295 Congress Avenue, New Haven, CT 06536, USA.ORCID 0000-0001-7599-3471
Eduardo A GroismanDepartment of Microbial Pathogenesis, Yale School of Medicine, 295 Congress Avenue, New Haven, CT 06536, USA.ORCID 0000-0001-6860-7691

Funding

Causes and consequences of interpersonal microbial variationR35GM118159 · NIGMS · YALE UNIVERSITY · PI Andrew L Goodman · 2016 to 2026
$5.6M
Functional and Structural Analysis of the Dot/Icm Type IVB Secretion MachineR01AI152421 · NIAID · YALE UNIVERSITY · PI LIU, JUN, ROY, CRAIG R. · 2020 to 2024
$2.9M
Control of gut colonization by the prominent gut bacterium Bacteroides thetaiotaomicronR01GM123798 · NIGMS · YALE UNIVERSITY · PI GROISMAN, EDUARDO · 2018 to 2025
$2.7M
NIAID NIH HHS R01 AI152421NIGMS NIH HHS R01 GM123798NIGMS NIH HHS R35 GM118159
6 · The paper itself

Abstract

Therapeutic manipulation of the gut microbiota holds great potential for human health. The mechanisms bacteria use to colonize the gut therefore present valuable targets for clinical intervention. We now report that bacteria use phase separation to enhance fitness in the mammalian gut. We establish that the intrinsically disordered region (IDR) of the broadly and highly conserved transcription termination factor Rho is necessary and sufficient for phase separation in vivo and in vitro in the human commensal

Indexed as

Bacterial ProteinsBacteroides thetaiotaomicronGastrointestinal MicrobiomeGenetic FitnessIntrinsically Disordered ProteinsRho FactorRNA HelicasesAnimalsFemaleGerm-Free LifeHumansMaleMiceMice, Inbred C57BLProtein DomainsTranscription Termination, GeneticBacterial ProteinsIntrinsically Disordered ProteinsRho FactorRNA Helicases

Identifiers

PMID36927025
PMCPMC10148683

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.