Evidence map›Paper›PMID 36925107›Full record

ArticleClinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases2023

The ongoing Streptococcus pyogenes (Group A Streptococcus) outbreak in London, United Kingdom, in December 2022: a molecular epidemiology study.

Adela Alcolea-Medina, Luke B Snell, Christopher Alder, Themoula Charalampous, Tom G S Williams, Synnovis Microbiology Laboratory Group, Mark K I Tan, Noor Al-Yaakoubi, Gul Humayun, William Newsholme and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
22.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 78 citations in OpenAlex.

  1. Genomic analysis and clinical characteristics of a seasonal upsurge of Streptococcus pyogenes emm12.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2026
    Article
  2. Sudden re-emergence ofNew microbes and new infections · 2026
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  3. Observational
  4. Comparing virulence profile of dominantInfectious diseases & immunity · 2026
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  5. Article
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  7. Clinical characterization of anFrontiers in cellular and infection microbiology · 2026
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  8. T cells in Group AFrontiers in cellular and infection microbiology · 2026
    Review
  9. Article
  10. Observational
  11. Article
  12. Role of viral coinfection in post-pandemic invasive Group A streptococcal infections in adults, a nation-wide cohort study (iGASWISS).European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2025
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  17. Epidemiological changes inEuro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2025
    Article
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  19. Observational
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

Adela Alcolea-MedinaDepartment of Infectious Diseases, King's College London, London, UK; Infection Sciences, Synnovis, London, UK.
Luke B SnellDepartment of Infectious Diseases, King's College London, London, UK; Centre for Clinical Diagnostics & Infectious Disease Research, Guy's & St. Thomas' NHS Foundation Trust, London, UK. Electronic address: luke.snell@kcl.ac.uk.
Christopher AlderCentre for Clinical Diagnostics & Infectious Disease Research, Guy's & St. Thomas' NHS Foundation Trust, London, UK.
Themoula CharalampousDepartment of Infectious Diseases, King's College London, London, UK.
Tom G S WilliamsCentre for Clinical Diagnostics & Infectious Disease Research, Guy's & St. Thomas' NHS Foundation Trust, London, UK.
Synnovis Microbiology Laboratory GroupInfection Sciences, Synnovis, London, UK.
Mark K I TanCentre for Clinical Diagnostics & Infectious Disease Research, Guy's & St. Thomas' NHS Foundation Trust, London, UK.
Noor Al-YaakoubiCentre for Clinical Diagnostics & Infectious Disease Research, Guy's & St. Thomas' NHS Foundation Trust, London, UK.
Gul HumayunCentre for Clinical Diagnostics & Infectious Disease Research, Guy's & St. Thomas' NHS Foundation Trust, London, UK.
William NewsholmeDepartment of Infection, Guy's & St. Thomas' NHS Foundation Trust, London, UK.
Simon GoldenbergCentre for Clinical Diagnostics & Infectious Disease Research, Guy's & St. Thomas' NHS Foundation Trust, London, UK; Department of Infection, Guy's & St. Thomas' NHS Foundation Trust, London, UK.
Gaia NebbiaCentre for Clinical Diagnostics & Infectious Disease Research, Guy's & St. Thomas' NHS Foundation Trust, London, UK.
Stuart J D NeilDepartment of Infectious Diseases, King's College London, London, UK.
Rahul BatraCentre for Clinical Diagnostics & Infectious Disease Research, Guy's & St. Thomas' NHS Foundation Trust, London, UK.
Jonathan D EdgeworthDepartment of Infectious Diseases, King's College London, London, UK; Centre for Clinical Diagnostics & Infectious Disease Research, Guy's & St. Thomas' NHS Foundation Trust, London, UK.
Guy's and St Thomas' NHS Foundation Trust · GBKing's College London · GB

Funding

Medical Research Council MC_PC_19041Medical Research Council MR/T005416/1Medical Research Council MR/W025140/1
6 · The paper itself

Abstract

objectivesEpidemiological and whole-genome sequencing analysis of an ongoing outbreak of Streptococcus pyogenes (Group A Streptococcus) in London (United Kingdom).

methodsProspective identification of Group A Streptococcus cases from a diagnostic laboratory serving central and south London between 27 November and 10 December 2022. Case notes were reviewed and isolates were retrieved. Case numbers were compared with the previous 5 years. Whole-genome sequencing was performed with long-read, nanopore technology for emm typing and identification of superantigen genes. Associations of pathogen-related factors with an invasive disease were assessed by single-variable and multi-variable logistic regression.

resultsCase numbers began increasing in October 2022 from a baseline of 2.0 cases per day, and in December 2022, the average daily case numbers reached 10.8 cases per day, four-fold the number usually seen in winter. A total of 113 cases were identified during the prospective study period. Three quarters (86/113, 76%) were paediatric cases, including 2 deaths. Of 113 cases, 11 (10%) were invasive. In total, 56 isolates were successfully sequenced, including 10 of 11 (91%) invasive isolates. The emm12 (33/56, 59%) and emm1 (9/56, 16%) types were predominant, with 7 of 9 (78%) emm1 isolates being from the M1uk clone. The majority of invasive isolates had superantigen genes spea (7/10, 70%) and spej (8/10, 80%), whereas, in non-invasive isolates, these superantigen genes were found less frequently (spea: 5/46, 11% and spej: 7/46, 15%). By multivariable analysis of pathogen-related factors, spea (OR 8.9, CI 1.4-57, p 0.020) and spej (OR 12, CI 1.8-78, p 0.011) were associated with invasive disease.

conclusionsemm12 and emm1 types predominate in the ongoing outbreak, which mainly affects children. In this outbreak, the spea and spej superantigen genes are associated with the severity of presentation.

Indexed as

Streptococcal InfectionsStreptococcus pyogenesAntigens, BacterialBacterial Outer Membrane ProteinsChildDisease OutbreaksHumansLondonMolecular EpidemiologyProspective StudiesSuperantigensUnited KingdomAntigens, BacterialBacterial Outer Membrane ProteinsSuperantigensBacterial typingEpidemiologyGroup A StreptococcusStreptococcus pyogenesWhole-genome sequencing

Identifiers

PMID36925107
PMCPMC10769882
OpenAlexW4324368131

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.