Evidence map›Paper›PMID 36922933›Full record

ArticleCancer research communications2022

Whole-exome Sequencing of Nigerian Prostate Tumors from the Prostate Cancer Transatlantic Consortium (CaPTC) Reveals DNA Repair Genes Associated with African Ancestry.

Jason A White, Ernest T Kaninjing, Kayode A Adeniji, Paul Jibrin, John O Obafunwa, Chidiebere N Ogo, Faruk Mohammed, Ademola Popoola, Omolara A Fatiregun, Olabode P Oluwole and 13 more

Open access · goldFull text read
In one paragraph

Article in Cancer research communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 26 citations in OpenAlex.

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  15. Biomarkers of Aggressive Prostate Cancer at Diagnosis.International journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 16 institutions in 2 countries.

Jason A WhiteTuskegee University, Center for Cancer Research, Tuskegee, Alabama.ORCID 0000-0002-2725-5009
Ernest T KaninjingGeorgia College & State University, Milledgeville, Georgia.ORCID 0000-0003-4250-9756
Kayode A AdenijiUniversity of Ilorin Teaching Hospital, Nigeria, Ilorin.
Paul JibrinNational Hospital Abuja, Nigeria, Abuja.
John O ObafunwaLagos State University Teaching Hospital, Ikeja, Lagos, Nigeria.ORCID 0000-0001-6014-168X
Chidiebere N OgoFederal Medical Centre, Abeokuta, Nigeria.
Faruk MohammedAhmadu Bello University, Zaria Nigeria.ORCID 0000-0003-2319-8948
Ademola PopoolaUniversity of Ilorin Teaching Hospital, Nigeria, Ilorin.ORCID 0000-0002-1850-2223
Omolara A FatiregunLagos State University Teaching Hospital, Ikeja, Lagos, Nigeria.
Olabode P OluwoleUniversity of Abuja, FCT, Nigeria.
Balasubramanyam KaranamTuskegee University, Center for Cancer Research, Tuskegee, Alabama.ORCID 0000-0002-0782-2539
Isra ElhussinTuskegee University, Center for Cancer Research, Tuskegee, Alabama.ORCID 0000-0002-4141-8783
Stefan AmbsMolecular Epidemiology Section, Laboratory of Human Carcinogenesis, Center for Cancer Research, NCI, Bethesda, Maryland.ORCID 0000-0001-7651-9309
Wei TangMolecular Epidemiology Section, Laboratory of Human Carcinogenesis, Center for Cancer Research, NCI, Bethesda, Maryland.ORCID 0000-0002-7089-4391
Melissa DavisDepartment of Surgery, New York Presbyterian - Weill Cornell Medicine, New York, New York.ORCID 0000-0002-6124-6923
Paz PolakC2i Genomics, New York, New York.
Moray J CampbellDivision of Pharmaceutics and Pharmacology, College of Pharmacy, The Ohio State University, Columbus, Ohio.ORCID 0000-0002-3355-0928
Kathryn R BrignoleUniversity of North Carolina Chapel Hill, North Carolina.ORCID 0000-0002-1796-6499
Solomon O RotimiDepartment of Biochemistry, Covenant University, Ota, Nigeria.
Windy Dean-ColombTuskegee University, Center for Cancer Research, Tuskegee, Alabama.
Folake T OdedinaCenter for Health Equity and Community Engagement Research, Mayo Clinic, Jacksonville, Florida.ORCID 0000-0003-3796-1385
Damali N MartinDivision of Cancer Control and Population Sciences, NCI, Rockville, Maryland.
Clayton YatesTuskegee University, Center for Cancer Research, Tuskegee, Alabama.ORCID 0000-0001-5420-9852
Tuskegee University · USCenter for Cancer Research · USLagos State University Teaching Hospital · NGUniversity of Ilorin Teaching Hospital · NGAhmadu Bello University · NGCornell University · USCovenant University · NGFederal Medical Centre · NGGeorgia College & State University · USID Genomics (United States) · USMayo Clinic in Florida · USNational Hospital Abuja · NGNile University of Nigeria · NGPiedmont Newnan Hospital · USThe Ohio State University · USUniversity of North Carolina at Chapel Hill · US

Funding

Tuskegee University Center for Biomedical Research/ Research Centers at Minority InstitutionsU54MD007585 · NIMHD · TUSKEGEE UNIVERSITY · PI Jason Anthony White · 2017 to 2026
$29.4M
TRAINING AND CAREER DEVELOPMENTU54CA118948 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI UPENDER MANNE · 2005 to 2026
$26.6M
Research Training & Career Development ProgramU54CA118638 · NCI · MOREHOUSE SCHOOL OF MEDICINE · PI Desiree Avia Rivers · 2005 to 2026
$22.7M
Research Education CoreU54CA118623 · NCI · TUSKEGEE UNIVERSITY · PI Vivian L Carter, TIMOTHY TURNER · 2005 to 2026
$20.2M
NCI NIH HHS U54 CA118623NCI NIH HHS U54 CA118638NCI NIH HHS U54 CA118948NIMHD NIH HHS U54 MD007585
6 · The paper itself

Abstract

In this study, we used whole-exome sequencing of a cohort of 45 advanced-stage, treatment-naïve Nigerian (NG) primary prostate cancer tumors and 11 unmatched nontumor tissues to compare genomic mutations with African American (AA) and European American (EA) The Cancer Genome Atlas (TCGA) prostate cancer. NG samples were collected from six sites in central and southwest Nigeria. After whole-exome sequencing, samples were processed using GATK best practices. Significance: MAA have higher rates of prostate cancer incidence and mortality, however, are severely underrepresented in genomic studies. This is the first study utilizing whole-exome sequencing in NG men to identify West African ancestry-linked variant patterns that impact DNA damage repair pathways.

Indexed as

Prostatic NeoplasmsDNA RepairExome SequencingHumansMaleMismatch Repair Endonuclease PMS2MutationMismatch Repair Endonuclease PMS2

Identifiers

PMID36922933
PMCPMC10010347
OpenAlexW4296067902

What OpenQuestion holds

Textfull text, public
LicenceCC BY
measurements read94
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.