Evidence map›Paper›PMID 36921046›Full record

ArticleScience advances2023

Solanoeclepin B, a hatching factor for potato cyst nematode.

Kosuke Shimizu, Ryota Akiyama, Yuya Okamura, Chihiro Ogawa, Yuki Masuda, Itaru Sakata, Bunta Watanabe, Yukihiro Sugimoto, Atsuhiko Kushida, Keiji Tanino and 1 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
6.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Precision Editing of NLRS Improves Effector Recognition for Enhanced Disease Resistance.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  4. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Kosuke ShimizuGraduate School of Agricultural Science, Kobe University, Rokkodai 1-1, Nada, Kobe, Hyogo 657-8501, Japan.ORCID 0000-0002-5134-102X
Ryota AkiyamaGraduate School of Agricultural Science, Kobe University, Rokkodai 1-1, Nada, Kobe, Hyogo 657-8501, Japan.ORCID 0000-0003-2116-4226
Yuya OkamuraGraduate School of Agricultural Science, Kobe University, Rokkodai 1-1, Nada, Kobe, Hyogo 657-8501, Japan.
Chihiro OgawaGraduate School of Agricultural Science, Kobe University, Rokkodai 1-1, Nada, Kobe, Hyogo 657-8501, Japan.
Yuki MasudaGraduate School of Agricultural Science, Kobe University, Rokkodai 1-1, Nada, Kobe, Hyogo 657-8501, Japan.
Itaru SakataTechnology Application Research Team, Department of Research Promotion, Hokkaido Agricultural Research Center, NARO, 1 Hitsujigaoka, Toyohira, Sapporo, Hokkaido 062-8555, Japan.ORCID 0000-0003-2563-5208
Bunta WatanabeThe Jikei University School of Medicine, 8-3-1 Kokuryo, Chohu, Tokyo 182-8570, Japan.ORCID 0000-0003-3645-5712
Yukihiro SugimotoGraduate School of Agricultural Science, Kobe University, Rokkodai 1-1, Nada, Kobe, Hyogo 657-8501, Japan.ORCID 0000-0002-8767-9671
Atsuhiko KushidaTechnology Application Research Team, Department of Research Promotion, Hokkaido Agricultural Research Center, NARO, 1 Hitsujigaoka, Toyohira, Sapporo, Hokkaido 062-8555, Japan.ORCID 0000-0002-4549-7861
Keiji TaninoDepartment of Chemistry, Faculty of Science, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan.ORCID 0000-0002-0580-0125
Masaharu MizutaniGraduate School of Agricultural Science, Kobe University, Rokkodai 1-1, Nada, Kobe, Hyogo 657-8501, Japan.ORCID 0000-0002-4321-0644
Kobe University · JPHokkaido Agricultural Research Center · JPHokkaido University · JPJikei University School of Medicine · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The potato cyst nematode (PCN) causes extensive crop losses worldwide. Because the hatching of PCN requires host-derived molecules known as hatching factors (HFs), regulating HF production in host plants may help to control this harmful pest. Solanoeclepin A (SEA), isolated from potato, is the most active HF for PCN; however, its biosynthesis is completely unknown. We discovered a HF called solanoeclepin B (SEB) from potato and tomato root exudates and showed that SEB was biosynthesized in the plant and converted to SEA outside the plant by biotic agents. Moreover, we identified five SEB biosynthetic genes encoding three 2-oxoglutarate-dependent dioxygenases and two cytochrome P450 monooxygenases in tomato. Exudates from tomato hairy roots in which each of the genes was disrupted contained no SEB and had low hatch-stimulating activity for PCN. These findings will help to breed crops with a lower risk of PCN infection.

Indexed as

NematodaSolanum lycopersicumSolanum tuberosumAnimalsPlant BreedingPlant Roots

Identifiers

PMID36921046
PMCPMC10017031
OpenAlexW4324324613

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.