Evidence map›Paper›PMID 36920247›Full record

ArticleThe Journal of cell biology2023

A general method for quantitative fractionation of mammalian cells.

Yael Udi, Wenzhu Zhang, Milana E Stein, Inna Ricardo-Lax, Hilda A Pasolli, Brian T Chait, Michael P Rout

Open access · hybridFull text read
In one paragraph

Article in The Journal of cell biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Yael UdiLaboratory of Cellular and Structural Biology, The Rockefeller University , New York, NY, USA.ORCID 0000-0001-8451-2246
Wenzhu ZhangLaboratory of Mass Spectrometry and Gaseous Ion Chemistry, The Rockefeller University , New York, NY, USA.ORCID 0009-0001-3154-871X
Milana E SteinLaboratory of Cellular and Structural Biology, The Rockefeller University , New York, NY, USA.ORCID 0000-0001-6540-4389
Inna Ricardo-LaxLaboratory of Virology and Infectious Disease, The Rockefeller University , New York, NY, USA.ORCID 0000-0002-9590-9692
Hilda A PasolliElectron Microscopy Resource Center, The Rockefeller University , New York, NY, USA.ORCID 0000-0003-3899-3530
Brian T ChaitLaboratory of Mass Spectrometry and Gaseous Ion Chemistry, The Rockefeller University , New York, NY, USA.ORCID 0000-0003-3524-557X
Michael P RoutLaboratory of Cellular and Structural Biology, The Rockefeller University , New York, NY, USA.ORCID 0000-0003-2010-706X
Rockefeller University · US

Funding

TR&D Project 4. The Imaging Stage: Multiscale Spatiotemporal Modeling of Macromolecular Systems in Cellular NeighborhoodsP41GM109824 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2014 to 2023
$18.8M
Structure-Function Mapping of the Nuclear Pore Complex-RenewalR01GM112108 · NIGMS · ROCKEFELLER UNIVERSITY · PI JOHN D. AITCHISON, MICHAEL P ROUT · 2015 to 2026
$9.1M
Altered Communication between the nucleus and the mitochondria under oncogenic statesR01CA228351 · NCI · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2019 to 2023
$1.9M
NCI NIH HHS R01 CA228351NIGMS NIH HHS P41 GM109824NIGMS NIH HHS R01 GM112108NIH HHS P41 GM109824
6 · The paper itself

Abstract

Subcellular fractionation in combination with mass spectrometry-based proteomics is a powerful tool to study localization of key proteins in health and disease. Here we offered a reliable and rapid method for mammalian cell fractionation, tuned for such proteomic analyses. This method proves readily applicable to different cell lines in which all the cellular contents are accounted for, while maintaining nuclear and nuclear envelope integrity. We demonstrated the method's utility by quantifying the effects of a nuclear export inhibitor on nucleoplasmic and cytoplasmic proteomes.

Indexed as

Cell FractionationCell NucleusProteomeAnimalsCell LineCytoplasmMammalsProteomicsProteome

Identifiers

PMID36920247
PMCPMC10040634
OpenAlexW4324303380

What OpenQuestion holds

Textfull text, public
LicenceCC BY
measurements read67
reference markers read3
identifiers read1
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.