Evidence map›Paper›PMID 36920097›Full record

ArticleMolecular biology of the cell2023

DAmFRET measures saturating concentrations and toxicities of protein phase transitions in vivo.

Tayla Miller, Jianzheng Wu, Shriram Venkatesan, Alejandro Rodriguez Gama, Randal Halfmann

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. A tool to dissect heterotypic determinants of homotypic protein phase behavior.Protein science : a publication of the Protein Society · 2025
    Article
  6. A tunable affinity fusion tag for protein self-assembly.bioRxiv : the preprint server for biology · 2025
    Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Tayla MillerStowers Institute for Medical Research, Kansas City, MO 64110.
Jianzheng WuStowers Institute for Medical Research, Kansas City, MO 64110.
Shriram VenkatesanStowers Institute for Medical Research, Kansas City, MO 64110.
Alejandro Rodriguez GamaStowers Institute for Medical Research, Kansas City, MO 64110.
Randal HalfmannStowers Institute for Medical Research, Kansas City, MO 64110.ORCID 0000-0002-6592-1471
Stowers Institute for Medical Research · US

Funding

Elucidating mechanisms of amyloid nucleation in vivoR01GM130927 · NIGMS · STOWERS INSTITUTE FOR MEDICAL RESEARCH · PI HALFMANN, RANDAL ARTHUR · 2020 to 2023
$1.3M
Evaluating the role of protein self-assembly in the innate immune systemF99AG068511 · NIA · STOWERS INSTITUTE FOR MEDICAL RESEARCH · PI RODRIGUEZ GAMA, ALEJANDRO · 2020 to 2021
$61k
NIA NIH HHS F99 AG068511NIGMS NIH HHS R01 GM130927
6 · The paper itself

Abstract

Protein phase transitions broadly govern protein function and dysfunction. However, analyzing the consequences of specific phase transitions in cells is hindered by the low throughput and limited resolution of fluorescence microscopy, and this problem is compounded for proteins with complex phase behavior such as those implicated in age-associated neurodegenerative diseases. As one solution to this problem, we incorporated an orthogonally fluorescence proxy of total protein expression to adjust for effective cell volume differences in a flow cytometric assay for protein self-association-Distributed Amphifluoric FRET (DAmFRET)-thereby allowing the intracellular saturating concentrations of different proteins to be precisely compared in single experiments. We further found that the effective cell volume decreased in cells experiencing proteotoxicity, which provided a simple way to assign toxicity to specific phases of ectopically expressed proteins.

Indexed as

Fluorescence Resonance Energy TransferProteinsFlow CytometryMicroscopy, FluorescenceProtein BindingProteins

Identifiers

PMID36920097
PMCPMC10208106
OpenAlexW4324309677

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.