Evidence map›Paper›PMID 36920032›Full record

ArticleeLife2023

Rescue of

Arianne M Babina, Serhiy Surkov, Weihua Ye, Jon Jerlström-Hultqvist, Mårten Larsson, Erik Holmqvist, Per Jemth, Dan I Andersson, Michael Knopp

Open access · goldAbstract read
In one paragraph

Article in eLife, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
6.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 22 citations in OpenAlex.

  1. Enhanced production of l-histidine inSynthetic and systems biotechnology · 2026
    Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Something from nothing: The birth of new phage defense genes.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Review
  9. Emergence of antiphage functions from random sequence libraries reveals mechanisms of gene birth.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  10. High-throughput discovery of inhibitory protein fragments with AlphaFold.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  11. Article
  12. De Novo Genes.Annual review of genetics · 2024
    Review
  13. High-throughput discovery of inhibitory protein fragments with AlphaFold.bioRxiv : the preprint server for biology · 2024
    Article
  14. Article
  15. Article
  16. Article
  17. Toxin rescue by a random sequence.Nature ecology & evolution · 2023
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 2 countries.

Arianne M BabinaDepartment of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.ORCID 0000-0002-4635-8396
Serhiy SurkovDepartment of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.
Weihua YeDepartment of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.
Jon Jerlström-HultqvistDepartment of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.
Mårten LarssonDepartment of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.
Erik HolmqvistDepartment of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden.
Per JemthDepartment of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.ORCID 0000-0003-1516-7228
Dan I AnderssonDepartment of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.ORCID 0000-0001-6640-2174
Michael KnoppDepartment of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.ORCID 0000-0002-8218-3263
Uppsala University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Increasing numbers of small proteins with diverse physiological roles are being identified and characterized in both prokaryotic and eukaryotic systems, but the origins and evolution of these proteins remain unclear. Recent genomic sequence analyses in several organisms suggest that new functions encoded by small open reading frames (sORFs) may emerge de novo from noncoding sequences. However, experimental data demonstrating if and how randomly generated sORFs can confer beneficial effects to cells are limited. Here, we show that by upregulating

Indexed as

Escherichia coliEscherichia coli ProteinsOpen Reading FramesOperonProteinsRNAEscherichia coli ProteinsProteinsRNAauxotrophde novoE. colievolutionary biologygene evolutionhis operoninfectious diseasemicrobiologyRNA bindingsmall proteins

Identifiers

PMID36920032
PMCPMC10065794
OpenAlexW4324311049

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.