Evidence map›Paper›PMID 36919074›Full record

ArticleCureus2023

Exploring the Immunodominant Epitopes of SARS-CoV-2 Nucleocapsid Protein as Exposure Biomarker.

Kapil Vashisht, Bharti Goyal, Rahul Pasupureddy, Byoung-Kuk Na, Ho-Joon Shin, Dibakar Sahu, Sajal De, Soumyananda Chakraborti, Kailash C Pandey

Open access · diamondFull text read
In one paragraph

Article in Cureus, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it, 5 citations in OpenAlex.

  1. Pooled it
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  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Kapil VashishtParasite-Host Biology, Indian Council of Medical Research-National Institute of Malaria Research (ICMR-NIMR), Delhi, IND.
Bharti GoyalParasite-Host Biology, Indian Council of Medical Research-National Institute of Malaria Research (ICMR-NIMR), Delhi, IND.
Rahul PasupureddyParasite-Host Biology, Indian Council of Medical Research-National Institute of Malaria Research (ICMR-NIMR), Delhi, IND.
Byoung-Kuk NaParasitology and Institute of Health Sciences, Gyeongsang National University College of Medicine, Jinju, KOR.
Ho-Joon ShinTropical Infectious Disease Cooperation Laboraory, Ajou University School of Medicine, Suwon, KOR.
Dibakar SahuPulmonology Department, All India Institute of Medical Sciences, Raipur, IND.
Sajal DePulmonology Department, All India Institute of Medical Sciences, Raipur, IND.
Soumyananda ChakrabortiParasite-Host Biology, Indian Council of Medical Research-National Institute of Malaria Research (ICMR-NIMR), Delhi, IND.
Kailash C PandeyParasite-Host Biology, Indian Council of Medical Research-National Institute of Malaria Research (ICMR-NIMR), Delhi, IND.
Academy of Scientific and Innovative Research · INAll India Institute of Medical Sciences Raipur · INNational Institute of Malaria Research · INNational Institute of Medical Statistics · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background The nucleocapsid protein (N protein) of SARS-CoV-2 is undeniably a potent target for the development of diagnostic tools due to its abundant expression and lower immune evasion pressure compared to spike (S) protein. Methods Blood samples of active COVID-19 infections (n=71) and post-COVID-19 (n=11) were collected from a tertiary care hospital in India; pre-COVID-19 (n=12) sera samples served as controls. Real-time reverse transcriptase-PCR (rRT-PCR) confirmed pooled sera samples (n=5) were used with PEPperCHIP® SARS-CoV-2 Proteome Microarray (PEPperPRINT GmbH, Germany) to screen immunodominant epitopes of SARS-CoV-2. Highly immunodominant epitopes were then commercially synthesized and further validated for their immunoreactivity by dot-blot and ELISA. Results The lowest detectable concentration (LDC) of the N1 peptide in the dot-blot assay was 12.5 µg demonstrating it to be fairly immunoreactive compared to control sera. IgG titers against the contiguous peptide (N2: 156AIVLQLPQGTTLPKGFYAEGS176) was found to be significantly higher (p=0.018) in post-COVID-19 compared to pre-COVID-19 control sera. These results suggested that N2-specific IgG titers buildup over time as expected in post-COVID-19 sera samples, while a non-significant immunoreactivity of the N2 peptide was also observed in active-COVID-19 sera samples. However, there were no significant differences in the total IgG titers between active COVID-19 infections, post-COVID-19 and pre-COVID-19 controls. Conclusion The N2-specific IgG titers in post-COVID-19 samples demonstrated the potential of N protein as an exposure biomarker, particularly in sero-surveillance studies.

Indexed as

covid-19immunodominant epitopesnucleocapsid proteinprotein microarraysars-cov-2

Identifiers

PMID36919074
PMCPMC10008226
OpenAlexW4319982125

What OpenQuestion holds

Textfull text, public
LicenceCC BY
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.