Evidence map›Paper›PMID 36918840›Full record

ArticleBMC cancer2023

The expression, immune infiltration, prognosis, and experimental validation of OSBPL family genes in liver cancer.

Kunpeng Tian, Yongling Ying, Jingjing Huang, Hao Wu, Chengyue Wei, Liang Li, Longjun Chen, Lichuan Wu

Open access · goldFull text read
In one paragraph

Article in BMC cancer, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 16 citations in OpenAlex.

  1. Pooled it
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  7. Role of Oxysterol-Binding Protein Family in Cholesterol Metabolism and Cancer Progression: A Review.Medical science monitor : international medical journal of experimental and clinical research · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Kunpeng Tian *School of Medicine, Guangxi University, Nanning, Guangxi, 530004, China.
Yongling Ying *School of Medicine, Guangxi University, Nanning, Guangxi, 530004, China.
Jingjing HuangDepartment of Spleen and Stomach Liver Diseases, The First Affiliated Hospital of Guangxi University of Traditional Chinese Medicine, Nanning, Guangxi, 530200, China.
Hao WuSchool of Medicine, Guangxi University, Nanning, Guangxi, 530004, China.
Chengyue WeiSchool of Medicine, Guangxi University, Nanning, Guangxi, 530004, China.
Liang LiSchool of Medicine, Guangxi University, Nanning, Guangxi, 530004, China.
Longjun ChenSchool of Medicine, Guangxi University, Nanning, Guangxi, 530004, China.
Lichuan WuSchool of Medicine, Guangxi University, Nanning, Guangxi, 530004, China. richard_wu@gxu.edu.cn.
Guangxi University · CNThe First Affiliated Hospital of Guangxi University of Traditional Chinese Medicine · CN

Funding

College Students' Innovation and Entrepreneurship Project of Guangxi University 202110593092National Natural Science Foundation of China 82260715Natural Science Foundation of Guangxi Province 2018GXNSFAA050055Natural Science Foundation of Guangxi Province 2022GXNSFAA035460
6 · The paper itself

Abstract

backgroundLiver cancer is the third most deadly malignant tumor in the world with poor prognosis and lacks early diagnostic markers. It is urgent need to explore new biomarkers and prognostic factors. The oxysterol-binding protein-like family proteins (OSBPLs) are essential mediators of lipid transportation and cholesterol balancing which has been reported to participate in cancer progression. So far, the expression, immune infiltration, and prognosis of OSBPLs have not been elucidated in liver cancer.

methodsThe differential expressions of OSBPLs between liver tumor and normal tissues were assessed by analyzing RNA-seq data from TCGA and protein data from CPTAC, respectively. Subsequently, genetic variations, potential functional enrichment analysis, and immune cell infiltration were analyzed. Further, the prognostic effects of OSBPLs were identified via constructing lasso models and performing receiver operating characteristic curve (ROC) analysis. Moreover, 10 local liver cancer specimens were involved to validate the expression of OSBPL3 via immunohistochemistry (IHC) assay. Finally, CCK-8, cell cycle, apoptosis, transwell assays, real time qPCR (RT-qPCR), and western blot assays were conducted to explore the function of OSBPL3 in liver cancer cells.

resultsThe mRNA of OSBPL2, OSBPL3, and OSBPL8 were highly expressed while OSBPL6 was lowly expressed in liver cancer samples compared with normal samples. As to the protein expression, OSBPL2 and OSBPL3 were significantly elevated and OSBPL5, OSBPL6, OSBPL9, OSBPL10, OSBPL11 were downregulated in tumor samples. A positive correlation was found between copy number variations (CNV) and the expression of OSBPL2, OSBPL8, OSBPL9, OSBPL11, while DNA methylation was negatively associated with the expressions of OSBPLs. Of these, CNV amplification mainly contributed to the overexpression of OSBPL2 and DNA methylation may be responsible for the high expression of OSBPL3. Interestingly, OSBPL3, OSBPL5, SOBPL7, and OSBPL10 were significantly positively correlated with immune infiltration. Notably, OSBPL3 was identified correlated to overall survival (OS) and disease specific survival (DSS) in liver cancer. Functionally, knocking down OSBPL3 reduced liver cancer cell viability, induced a G2/M cell cycle arrest, promoted apoptosis, and restrained cell migration.

conclusionIn aggregate, we reported a heretofore undescribed role of OSBPLs in liver cancer by analyzing multi-omics data. Importantly, we identified OSBPL3 was overexpressed in liver tumor compared with normal and its high expression was correlated with poor OS and DSS. Inhibition of OSBPL3 resulted in a pronounced decrease in cell proliferation and migration.

Indexed as

Liver NeoplasmsReceptors, SteroidApoptosisDNA Copy Number VariationsHumansOxysterol Binding ProteinsPrognosisOSBPL2 protein, humanOxysterol Binding ProteinsReceptors, SteroidBioinformaticsExperimental validationExpressionImmune infiltrationLiver cancerOSBPL familyPrognosis

Identifiers

PMID36918840
PMCPMC10015719
OpenAlexW4324141819

What OpenQuestion holds

Textfull text, public
LicenceCC BY
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table measurements read12
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.