Evidence map›Paper›PMID 36918548›Full record

ArticleNature communications2023

Association of SARS-CoV-2 BA.4/BA.5 Omicron lineages with immune escape and clinical outcome.

Joseph A Lewnard, Vennis Hong, Jeniffer S Kim, Sally F Shaw, Bruno Lewin, Harpreet Takhar, Sara Y Tartof

Open access · goldFull text read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
6.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Observational
  15. Article
  16. Review
  17. Article
  18. Article
  19. Human airway and nasal organoids reveal escalating replicative fitness of SARS-CoV-2 emerging variants.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  20. Trends in Cases, Hospitalizations, and Mortality Related to the Omicron BA.4/BA.5 Subvariants in South Africa.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Joseph A LewnardDivision of Epidemiology, School of Public Health, University of California, Berkeley, Berkeley, CA, 94720, USA. jLewnard@berkeley.edu.ORCID 0000-0002-8505-8839
Vennis HongDepartment of Research & Evaluation, Kaiser Permanente Southern California, Pasadena, CA, 91101, USA.
Jeniffer S KimDepartment of Research & Evaluation, Kaiser Permanente Southern California, Pasadena, CA, 91101, USA.
Sally F ShawDepartment of Research & Evaluation, Kaiser Permanente Southern California, Pasadena, CA, 91101, USA.ORCID 0000-0002-6553-1772
Bruno LewinDepartment of Research & Evaluation, Kaiser Permanente Southern California, Pasadena, CA, 91101, USA.
Harpreet TakharDepartment of Research & Evaluation, Kaiser Permanente Southern California, Pasadena, CA, 91101, USA.
Sara Y TartofDepartment of Research & Evaluation, Kaiser Permanente Southern California, Pasadena, CA, 91101, USA. Sara.Y.Tartof@kp.org.ORCID 0000-0003-2336-8476
Kaiser Permanente · USBerkeley College · US

Funding

Emerging methods and applications for test-negative studies of of infectious disease interventionsR01AI148127 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI JEWELL, NICHOLAS P · 2020 to 2023
$1.8M
NIAID NIH HHS R01 AI148127
6 · The paper itself

Abstract

Expansion of the SARS-CoV-2 BA.4 and BA.5 Omicron subvariants in populations with prevalent immunity from prior infection and vaccination, and associated burden of severe COVID-19, has raised concerns about epidemiologic characteristics of these lineages including their association with immune escape or severe clinical outcomes. Here we show that BA.4/BA.5 cases in a large US healthcare system had at least 55% (95% confidence interval: 43-69%) higher adjusted odds of prior documented infection than time-matched BA.2 cases, as well as 15% (9-21%) and 38% (27-49%) higher adjusted odds of having received 3 and ≥4 COVID-19 vaccine doses, respectively. However, after adjusting for differences in epidemiologic characteristics among cases with each lineage, BA.4/BA.5 infection was not associated with differential risk of emergency department presentation, hospital admission, or intensive care unit admission following an initial outpatient diagnosis. This finding held in sensitivity analyses correcting for potential exposure misclassification resulting from unascertained prior infections. Our results demonstrate that the reduced severity associated with prior (BA.1 and BA.2) Omicron lineages, relative to the Delta variant, has persisted with BA.4/BA.5, despite the association of BA.4/BA.5 with increased risk of breakthrough infection among previously vaccinated or infected individuals.

Indexed as

COVID-19SARS-CoV-2Breakthrough InfectionsCOVID-19 VaccinesHumansCOVID-19 Vaccines

Identifiers

PMID36918548
PMCPMC10012300
OpenAlexW4324303557

What OpenQuestion holds

Textfull text, public
LicenceCC BY
measurements read67
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.