Evidence map›Paper›PMID 36917574›Full record

ArticlePLoS biology2023

Structures of apo Cas12a and its complex with crRNA and DNA reveal the dynamics of ternary complex formation and target DNA cleavage.

Li Jianwei, Chacko Jobichen, Satoru Machida, Sun Meng, Randy J Read, Chen Hongying, Shi Jian, Yuren Adam Yuan, J Sivaraman

Open access · goldFull text read
In one paragraph

Article in PLoS biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 22 citations in OpenAlex.

  1. Molecular mechanisms and biotechnology applications of CRISPR-Cas12a.Nature reviews. Molecular cell biology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Li JianweiDepartment of Biological Sciences, National University of Singapore, Singapore, Singapore.
Chacko JobichenDepartment of Biological Sciences, National University of Singapore, Singapore, Singapore.
Satoru MachidaDepartment of Biological Sciences, National University of Singapore, Singapore, Singapore.
Sun MengDepartment of Biological Sciences, National University of Singapore, Singapore, Singapore.
Randy J ReadDepartment of Haematology, University of Cambridge, Cambridge, United Kingdom.
Chen HongyingDepartment of Biological Sciences, National University of Singapore, Singapore, Singapore.
Shi JianDepartment of Biological Sciences, National University of Singapore, Singapore, Singapore.
Yuren Adam YuanDepartment of Biological Sciences, National University of Singapore, Singapore, Singapore.
J SivaramanDepartment of Biological Sciences, National University of Singapore, Singapore, Singapore.ORCID 0000-0001-9781-5326
National University of Singapore · SGUniversity of Cambridge · GB

Funding

Wellcome TrustWellcome Trust 209407/Z/17/Z
6 · The paper itself

Abstract

Cas12a is a programmable nuclease for adaptive immunity against invading nucleic acids in CRISPR-Cas systems. Here, we report the crystal structures of apo Cas12a from Lachnospiraceae bacterium MA2020 (Lb2) and the Lb2Cas12a+crRNA complex, as well as the cryo-EM structure and functional studies of the Lb2Cas12a+crRNA+DNA complex. We demonstrate that apo Lb2Cas12a assumes a unique, elongated conformation, whereas the Lb2Cas12a+crRNA binary complex exhibits a compact conformation that subsequently rearranges to a semi-open conformation in the Lb2Cas12a+crRNA+DNA ternary complex. Notably, in solution, apo Lb2Cas12a is dynamic and can exist in both elongated and compact forms. Residues from Met493 to Leu523 of the WED domain undergo major conformational changes to facilitate the required structural rearrangements. The REC lobe of Lb2Cas12a rotates 103° concomitant with rearrangement of the hinge region close to the WED and RuvC II domains to position the RNA-DNA duplex near the catalytic site. Our findings provide insight into crRNA recognition and the mechanism of target DNA cleavage.

Indexed as

CRISPR-Cas SystemsRNA, Guide, CRISPR-Cas SystemsBacterial ProteinsDNADNA CleavageRNABacterial ProteinsDNARNARNA, Guide, CRISPR-Cas Systems

Identifiers

PMID36917574
PMCPMC10013913
OpenAlexW4324129607

What OpenQuestion holds

Textfull text, public
LicenceCC BY
measurements read44
identifiers read6
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.