Evidence map›Paper›PMID 36916902›Full record

ArticleeLife2023

Emergence of time persistence in a data-driven neural network model.

Sebastien Wolf, Guillaume Le Goc, Georges Debrégeas, Simona Cocco, Rémi Monasson

Abstract read
In one paragraph

Article in eLife, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sebastien Wolf *Laboratory of Physics of the Ecole Normale Supérieure, CNRS UMR 8023 & PSL Research, Sorbonne Université, Université de Paris, Paris, France.ORCID 0000-0001-9394-3291
Guillaume Le Goc *Institut de Biologie Paris-Seine (IBPS), Laboratoire Jean Perrin, Sorbonne Université, CNRS, Paris, France.ORCID 0000-0002-6946-1142
Georges Debrégeas *Institut de Biologie Paris-Seine (IBPS), Laboratoire Jean Perrin, Sorbonne Université, CNRS, Paris, France.ORCID 0000-0003-3698-4497
Simona Cocco *Laboratory of Physics of the Ecole Normale Supérieure, CNRS UMR 8023 & PSL Research, Sorbonne Université, Université de Paris, Paris, France.ORCID 0000-0002-1852-7789
Rémi Monasson *Laboratory of Physics of the Ecole Normale Supérieure, CNRS UMR 8023 & PSL Research, Sorbonne Université, Université de Paris, Paris, France.ORCID 0000-0002-4459-0204

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Establishing accurate as well as interpretable models of network activity is an open challenge in systems neuroscience. Here, we infer an energy-based model of the anterior rhombencephalic turning region (ARTR), a circuit that controls zebrafish swimming statistics, using functional recordings of the spontaneous activity of hundreds of neurons. Although our model is trained to reproduce the low-order statistics of the network activity at short time scales, its simulated dynamics quantitatively captures the slowly alternating activity of the ARTR. It further reproduces the modulation of this persistent dynamics by the water temperature and visual stimulation. Mathematical analysis of the model unveils a low-dimensional landscape-based representation of the ARTR activity, where the slow network dynamics reflects Arrhenius-like barriers crossings between metastable states. Our work thus shows how data-driven models built from large neural populations recordings can be reduced to low-dimensional functional models in order to reveal the fundamental mechanisms controlling the collective neuronal dynamics.

Indexed as

Neural Networks, ComputerZebrafishAnimalsModels, NeurologicalNeuronsPhotic StimulationSwimmingdimensional reductionIsing modelmetastable stateneural persistenceneurosciencezebrafish

Identifiers

PMID36916902
PMCPMC10171858

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.