Evidence map›Paper›PMID 36916528›Full record

ArticleCancer medicine2023

Advancing wide implementation of precision oncology: A liquid nitrogen-free snap freezer preserves molecular profiles of biological samples.

Hanneke van der Wijngaart, Sahil Jagga, Henk Dekker, Richard de Goeij, Sander R Piersma, Thang V Pham, Jaco C Knol, Babs M Zonderhuis, Harry J Holland, Connie R Jiménez and 3 more

Open access · goldAbstract read
In one paragraph

Article in Cancer medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Hanneke van der WijngaartDepartment of Medical Oncology, Amsterdam UMC Location Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Sahil JaggaApplied Thermal Sciences, Faculty of Science and Technology, University of Twente, Enschede, The Netherlands.
Henk DekkerDepartment of Medical Oncology, Amsterdam UMC Location Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Richard de GoeijDepartment of Medical Oncology, Amsterdam UMC Location Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Sander R PiersmaDepartment of Medical Oncology, Amsterdam UMC Location Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Thang V PhamDepartment of Medical Oncology, Amsterdam UMC Location Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Jaco C KnolDepartment of Medical Oncology, Amsterdam UMC Location Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Babs M ZonderhuisDepartment of Surgery, Amsterdam UMC Location Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Harry J HollandApplied Thermal Sciences, Faculty of Science and Technology, University of Twente, Enschede, The Netherlands.
Connie R JiménezDepartment of Medical Oncology, Amsterdam UMC Location Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Henk M W VerheulDepartment of Medical Oncology, Erasmus University Medical Center, Rotterdam, The Netherlands.
Srinivas VanapalliApplied Thermal Sciences, Faculty of Science and Technology, University of Twente, Enschede, The Netherlands.
Mariette LabotsDepartment of Medical Oncology, Amsterdam UMC Location Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.ORCID 0000-0002-7095-1771
Dutch Cancer Society · NLUniversity of Twente · NLAmsterdam University Medical Centers · NLErasmus MC · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeIn precision oncology, tumor molecular profiles guide selection of therapy. Standardized snap freezing of tissue biospecimens is necessary to ensure reproducible, high-quality samples that preserve tumor biology for adequate molecular profiling. Quenching in liquid nitrogen (LN

methodsCancer cell lines and core needle normal tissue biopsies from five patients' liver resection specimens were used to compare mass spectrometry (MS)-based global phosphoproteomic and RNA sequencing profiles and RNA integrity obtained by both freezing methods.

resultsUnsupervised cluster analysis of phosphoproteomic and transcriptomic profiles of snap freezer versus LN

conclusionThe novel snap freezer preserves high-quality biospecimen and allows identification of individual patients' molecular profiles, while overcoming important limitations of the use of LN

Indexed as

CryopreservationNeoplasmsFreezingHumansPrecision MedicineRNARNAbiopsiescancercoolingmulti-omicsprecision oncologysnap freezing

Identifiers

PMID36916528
PMCPMC10225239
OpenAlexW4324129846

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.