Evidence map›Paper›PMID 36914661›Full record

ArticleNature communications2023

The cellular and KSHV A-to-I RNA editome in primary effusion lymphoma and its role in the viral lifecycle.

Suba Rajendren, Xiang Ye, William Dunker, Antiana Richardson, John Karijolich

Open access · goldFull text read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Suba RajendrenDepartment of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN, 37232-2363, USA.
Xiang YeDepartment of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN, 37232-2363, USA.
William DunkerDepartment of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN, 37232-2363, USA.
Antiana RichardsonDepartment of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN, 37232-2363, USA.
John KarijolichDepartment of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN, 37232-2363, USA. John.karijolich@vanderbilt.edu.ORCID 0000-0002-7925-1122
Vanderbilt University · US

Funding

Cell Intrinsic Immune Control of KSHVR01AI141448 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI KARIJOLICH, JOHN · 2020 to 2024
$2.1M
(PQ#2) Transposable element-mediated gene regulation in KSHV-associated cancerR01CA250051 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI KARIJOLICH, JOHN · 2020 to 2024
$2.1M
NCI NIH HHS R01 CA250051NIAID NIH HHS R01 AI141448
6 · The paper itself

Abstract

Adenosine-to-inosine RNA editing is a major contributor to transcriptome diversity in animals with far-reaching biological consequences. Kaposi's sarcoma-associated herpesvirus (KSHV) is the etiological agent of several human malignancies including primary effusion lymphoma (PEL). The extent of RNA editing within the KSHV transcriptome is unclear as is its contribution to the viral lifecycle. Here, we leverage a combination of biochemical and genomic approaches to determine the RNA editing landscape in host- and KSHV transcriptomes during both latent and lytic replication in PEL. Analysis of RNA editomes reveals it is dynamic, with increased editing upon reactivation and the potential to deregulate pathways critical for latency and tumorigenesis. In addition, we identify conserved RNA editing events within a viral microRNA and discover their role in miRNA biogenesis as well as viral infection. Together, these results describe the editome of PEL cells as well as a critical role for A-to-I editing in the KSHV lifecycle.

Indexed as

Herpesvirus 8, HumanLymphoma, Primary EffusionMicroRNAsSarcoma, KaposiAnimalsGene Expression Regulation, ViralHumansVirus LatencyVirus ReplicationMicroRNAs

Identifiers

PMID36914661
PMCPMC10011561
OpenAlexW4324128690

What OpenQuestion holds

Textfull text, public
LicenceCC BY
measurements read96
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.